Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme87735g00001 GCTTGTGGAACTGTCTACAGAGCTGTTATGAATGATGGTGAAGTTATTGCTGTCAAGAAATTGAATACACGCGGAGGAGAAGGAACAAGCGTCGACCGAAGCTTCCTTGCAGAGATTTCAACTCTTGGAAAGATCAGGCACAGGAACATTGTGAAGCTACATGGGTTTTGTTATCATGAGGATTCTAATCTTCTATTGTATCAATACATGGAAAATGGAAGCCTTGGTGAAAAACTTCATAATTCAAGTTCAAAAACATGTGAACTGGATTGGAATGTTAGATATAGAATAGCTCTAGGAGCAGCAGAAGGCTTATGCTATCTTCATTATGATTGTAAACCTCAAATCATTCATCGCGATATCAAGTCGAACAATATTTTGCTTGATCAAAGTTTTCAGGCTCATGTTGGTGACTTTGGATTGGCAAAGTTGATTGATTTTTCATTATCAAAATCTATGTCTGCTGTGGCCGGATCATATGGCTACATTGCCCCAGGTAAGAATAAGTTCAATATAAAGGTACTACAGCAATTGTAG 537 0.3818 ACGTVYRAVMNDGEVIAVKKLNTRGGEGTSVDRSFLAEISTLGKIRHRNIVKLHGFCYHEDSNLLLYQYMENGSLGEKLHNSSSKTCELDWNVRYRIALGAAEGLCYLHYDCKPQIIHRDIKSNNILLDQSFQAHVGDFGLAKLIDFSLSKSMSAVAGSYGYIAPGKNKFNIKVLQQL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme87735g00001 178 PANTHER LEUCINE RICH REPEAT KINASE 2 2 165 - -
Trme87735g00001 178 FunFam Protein kinase superfamily protein 70 144 - -
Trme87735g00001 178 Gene3D Phosphorylase Kinase; domain 1 1 70 - -
Trme87735g00001 178 Pfam Protein kinase domain 2 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme87735g00001 178 SMART serkin_6 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme87735g00001 178 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Trme87735g00001 178 SUPERFAMILY Protein kinase-like (PK-like) 2 165 IPR011009 -
Trme87735g00001 178 Gene3D Transferase(Phosphotransferase) domain 1 71 167 - -
Trme87735g00001 178 ProSiteProfiles Protein kinase domain profile. 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme87735g00001 Trme-Chr87735 1 537 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme87735g00001 1 165 Receptor kinase-like Gene Family AT5G65700 59.639 3.91e-61 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme87735g00001 Pkinase 2.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme87735g00001 - - gmx:100778032 291.582