Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8769g00001 ATGGGGCAATGGAAGATGAAGAAAATGAAACTGGGTGTTGGCAAAGCTTTAGGTTCATTGGTAGCTGCATTTCTTCAAGATCCAAGGTTGATAGCTCTGTTAGTGGCACCAGTGCTAATTATGATTTCAAATGGTGCCTATTTCTCCTTGCTTGTTCTAATTATGATTTTCCTCTATTTTGTTGGTTTTGGCATCTCATTAGCTGAAAGCAAATCAACTATTGATACAAGTAGAGACCAGCCATCGGTTCCAGTAGTCTCTTCGACNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAAAGTTGAAGAGGAGCTTAAAATTGCTTCCAGGCTGCGAAAATTCTCTTTCAATGATCTTAAGTTGGCAACAAGAAATTTTCGGCCCGAGAGTCTTCTTGGTGAAGGTGGGTTTGGTTGTGTGTTCAAAGGATGGATTGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGCCTTACTGTTGCAGTCAAAACCCTAAACCATGATGGGCTCCAGGGTCATAAAGAATGGCTGGCTGAAGTAAATTATCTTGGTGATTTAGTTCATCAAAACCTTGTCAAACTTATAGGCTACTGTATTGAAGATGATCAAAGGTTGCTGGTATATGAATTTATGCCTCGAGGAAGCCTGGAAAACCACTTGTTTAGGA 688 0.3794 MGQWKMKKMKLGVGKALGSLVAAFLQDPRLIALLVAPVLIMISNGAYFSLLVLIMIFLYFVGFGISLAESKSTIDTSRDQPSVPVVSSTXXXXXXXXXXXXXXXXKVEEELKIASRLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNYLGDLVHQNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFR 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8769g00001 229 Pfam Protein tyrosine and serine/threonine kinase 136 227 IPR001245 GO:0004672|GO:0006468
Trme8769g00001 229 Coils Coil 106 117 - -
Trme8769g00001 229 ProSiteProfiles Protein kinase domain profile. 132 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme8769g00001 229 SUPERFAMILY Protein kinase-like (PK-like) 112 228 IPR011009 -
Trme8769g00001 229 Gene3D Phosphorylase Kinase; domain 1 106 217 - -
Trme8769g00001 229 PANTHER OS01G0588500 PROTEIN-RELATED 87 229 - -
Trme8769g00001 229 FunFam Serine/threonine-protein kinase BIK1 100 217 - -
Trme8769g00001 229 ProSitePatterns Protein kinases ATP-binding region signature. 138 170 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8769g00001 Trme-Chr8769 112 1550 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8769g00001 118 228 Glycoside Hydrolase AT3G07070 55.856 7.50e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme8769g00001 PK_Tyr_Ser-Thr 1.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8769g00001 - - gmx:100807510 280.026