Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8749g00001 ATGGTCACACTCAAGTTATTAATCATATTCCAAATTTTCTTCTGCACCCCCCTTCATGTGTTGACAGTTCCTGATCACTTCAGCCTCCAAGGCGAATTTCCAACGTGGATTAAAGCACGTGATCGGATGATGTTGGAGACAAGTAATGTGAAAAATATCGATGTTGTGGTTGCTCTCGATGGAACCGAAGATTATAGAAAAGTTATGGATGCAATCTTTTCAGCGCCAAAACGAGATGGTATGGATGCTACGGTGATCTCTGGCAATTTAAGTAGCCGTCGAAATAATTTGACCTCGTATTACACAGCTACGTTTGCTGTTGATGGTATAGGTTTCATAGCAAAATATATTTCCTTCAAGAACACAGCAGGGCCTAAAAACAATCAGGCTGTGGCACTCAGATCAAGCTCCGATAAATCTGTATTTTATCGGTGTGGGATTTTTGGATACCAAGATAGTTTATATGCTCACTCCCAGCGTCAATTTTATAGGGAATGTAGAATAAGTGGCACCGTGGATTTTATTTTTGGTTATGCTGCCGCGGTTTTTCAAAATTGCAATATCTTGGTCAAGAAAGGGACACCGGGCCAAAGCAACACTATAACAGCTCAGGGAGGAATGCATGATTCTACCAAACCGTTTGGATTTTCATTCCAATTCTGCAAAATTTCGGCGGATCATGACCTTCTTCCGGTAGTTAAATCTACTCAGACATATCTTGGAAGACCATGGAAGGACCATTCAAAAACAATTTTCATGGAGACTTATATAACTAATGTGTTGAGTGCACAAGGATG 797 0.4053 MVTLKLLIIFQIFFCTPLHVLTVPDHFSLQGEFPTWIKARDRMMLETSNVKNIDVVVALDGTEDYRKVMDAIFSAPKRDGMDATVISGNLSSRRNNLTSYYTATFAVDGIGFIAKYISFKNTAGPKNNQAVALRSSSDKSVFYRCGIFGYQDSLYAHSQRQFYRECRISGTVDFIFGYAAAVFQNCNILVKKGTPGQSNTITAQGGMHDSTKPFGFSFQFCKISADHDLLPVVKSTQTYLGRPWKDHSKTIFMETYITNVLSAQG 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8749g00001 265 Pfam Pectinesterase 79 265 IPR000070 GO:0030599|GO:0042545
Trme8749g00001 265 Gene3D - 52 265 IPR012334 -
Trme8749g00001 265 SUPERFAMILY Pectin lyase-like 52 262 IPR011050 -
Trme8749g00001 265 ProSitePatterns Pectinesterase signature 2. 168 177 IPR033131 -
Trme8749g00001 265 PANTHER PECTINESTERASE 21 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8749g00001 Trme-Chr8749 116 1539 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8749g00001 32 265 Carbohydrate Esterase AT4G33220 50.566 9.40e-85 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8749g00001 K01051 - gmx:100798620 293.123