Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme874123g00001 GGACACAGAACAGTGAGAGAACCTAGAGTTGTTGTTCAGACAACAAGTGACATTGATATCCTAGATGATGGTTACAAATGGAGGAAATATGGACAAAAAGTTGTCAAGGGAAATCCAAATCCAAGTTCTATTGTTAATTTGAGTATCCAATGA 153 0.366 GHRTVREPRVVVQTTSDIDILDDGYKWRKYGQKVVKGNPNPSSIVNLSIQ 50
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme874123g00001 50 Pfam WRKY DNA -binding domain 22 43 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme874123g00001 50 Gene3D WRKY domain 8 50 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme874123g00001 50 SMART WRKY_cls 21 50 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme874123g00001 50 SUPERFAMILY WRKY DNA-binding domain 13 43 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme874123g00001 50 ProSiteProfiles WRKY domain profile. 16 50 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme874123g00001 50 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 5 43 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme874123g00001 Trme-Chr874123 2 226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme874123g00001 22 49 WRKY Transcription Factor Family AT2G38470 57.143 3.12e-06 39.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme874123g00001 WRKY 8.6e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme874123g00001 K13424 - csin:114305679 88.5817