Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme87411g00001 ATGGATCCAAAAATCTCAGATTTCGGTATGGCAAGAATTGTTGCTACGGATAATATTGAAGAAAATACACACAGAATTGTTGGAACATATGGTTACATGTCTCCAGAGTATGCAATGCATGGCCAGTTTTCAGTGAAATCTGATGTGTTTAGTTTTGGAGTAATGGTACTGGAGATTATCAGTGGAAAAAGGAAATATTCTTCMTCTGAATCAGATTGTGTTGATATACGGAAATATGCTTGGACAAAATGGAAAAACCAAACAGCATTGGAACTATTGGATCCTCAGATGGAAGGATCTTTGTTTCAAAATGATATCATAAG 323 0.3529 MDPKISDFGMARIVATDNIEENTHRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIISGKRKYSSSESDCVDIRKYAWTKWKNQTALELLDPQMEGSLFQNDII 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme87411g00001 107 ProSiteProfiles Protein kinase domain profile. 1 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme87411g00001 107 Pfam Protein tyrosine and serine/threonine kinase 4 70 IPR001245 GO:0004672|GO:0006468
Trme87411g00001 107 Gene3D Transferase(Phosphotransferase) domain 1 1 106 - -
Trme87411g00001 107 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 98 - -
Trme87411g00001 107 SUPERFAMILY Protein kinase-like (PK-like) 2 77 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme87411g00001 Trme-Chr87411 65 608 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme87411g00001 1 107 Receptor kinase-like Gene Family AT4G23150 58.333 5.14e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme87411g00001 PK_Tyr_Ser-Thr 1.6e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme87411g00001 - - tpra:123882552 217.238