Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme87404g00001 TTTCTGCATGACAAGGTTAAGCCACAAGTTGTTCACCGAGATATACGAGCCAGTAATGTGCTGCTTGACGAGGAATTTGGAGCACACCTTATGGGTGTTGGCTTGTCCAAGTTTGTGCCATATGAAGCAATGCATGAGAGGACTGTGATGGCTGGTGGAACTTATGGATACCTTGCTCCRGAGTTCGTGTACAGAAACGAGCTTACAACAAAGAGTGATGTTTATAGTTTTGGTGTCYTACTACTTGAAATAGTTAGTGGACGTAGACCGGCACAAGCCGTTGATTCTGTGGGTTGGCAGAGTATATTCGAATGGGCTACACCTCTTGTTCAAGCTCATCGCTACCCTGAACTGTTGGATCCTTATATATCTTCCTCGTCTACTAGTATCATCCCTGAGACTAGTTCTATCCAGAAGGTGGTTGACCTCGTTTATTCATGCACACAGCATGTCCCTTCTATGCGCCCTAGAATGTCGCACGTTGTTCATCAGTTGCAACAGTTTGCCCAGCCACCTGTAAAATAA 525 0.4514 FLHDKVKPQVVHRDIRASNVLLDEEFGAHLMGVGLSKFVPYEAMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLVQAHRYPELLDPYISSSSTSIIPETSSIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQFAQPPVK 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme87404g00001 174 SUPERFAMILY Protein kinase-like (PK-like) 1 165 IPR011009 -
Trme87404g00001 174 ProSiteProfiles Protein kinase domain profile. 1 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme87404g00001 174 Gene3D Transferase(Phosphotransferase) domain 1 1 172 - -
Trme87404g00001 174 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 1 174 - -
Trme87404g00001 174 ProSitePatterns Tyrosine protein kinases specific active-site signature. 10 22 IPR008266 GO:0004672|GO:0006468
Trme87404g00001 174 Pfam Protein tyrosine and serine/threonine kinase 9 165 IPR001245 GO:0004672|GO:0006468
Trme87404g00001 174 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme87404g00001 Trme-Chr87404 159 683 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme87404g00001 1 171 Receptor kinase-like Gene Family AT1G52310 84.884 5.71e-103 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Trme87404g00001 PK_Tyr_Ser-Thr 8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme87404g00001 - - csin:114318280 323.168