Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme871g00001 ATGCATCAGAAGACAATTGACATGGCTGCCGCCGCCGCCGCCAAAACACTATGGCCAACTCAGCCAACTCAATGGACTCGTGAAGACGTCAAGCTTTTCGAGAAAGCTCTAGTTAGTGTGTCGGAGCATTCATCTAACCGGTGGGAGGAAATCGCCGAACAAGTTCCCGGTAAGTCAGCAGCAGAAGTGAAGGATCAGTATGATGATTTGGTCCATGATNTTTTGGAAATTGAATCGGGTCGGGTTGAAGTTCCAAACTATCCTGATGACCTGGATGTGAATAGTGGCGGTGGAATGTCTAGACATGGTGATAACGAGAAGCAGAAGAAGAGGAAAGGAAAACCATGGACCGAAGAAGAACATAAGTTGTTTCTTGCTGGGCTTAAGGAATACAAAGAAGGTGAATGGAAACTCATTTCAAGATACTATGTTGTGACAAGAACACCAACACAGGTAGCAAGTCATGCTCAAAAGTACTTTCTTCGCAAGAATGAAGCGAATAAAGAGAGGAAAAGACCAAGCATTCATGACATTACATTGGAAGATAGTAACTCAGCTCCGGCGCCTATTGATCGGAATTGTGTTCCTCCTCCTGGTGTTGGTTCATTGCACCAGTCTCAAGGAATGTATTATTTTCCCTCCAACAGTATGCAAGATCAAATGGGTTCACAAATGCATTAG 681 0.442 MHQKTIDMAAAAAAKTLWPTQPTQWTREDVKLFEKALVSVSEHSSNRWEEIAEQVPGKSAAEVKDQYDDLVHDXLEIESGRVEVPNYPDDLDVNSGGGMSRHGDNEKQKKRKGKPWTEEEHKLFLAGLKEYKEGEWKLISRYYVVTRTPTQVASHAQKYFLRKNEANKERKRPSIHDITLEDSNSAPAPIDRNCVPPPGVGSLHQSQGMYYFPSNSMQDQMGSQMH 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme871g00001 226 MobiDBLite consensus disorder prediction 83 115 - -
Trme871g00001 226 MobiDBLite consensus disorder prediction 167 226 - -
Trme871g00001 226 ProSiteProfiles SANT domain profile. 116 164 IPR017884 -
Trme871g00001 226 ProSiteProfiles Myb-like domain profile. 108 160 IPR001005 -
Trme871g00001 226 NCBIfam myb-like DNA-binding domain, SHAQKYF class 113 163 IPR006447 GO:0003677
Trme871g00001 226 FunFam transcription factor MYB1R1 114 165 - -
Trme871g00001 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 164 IPR017930 -
Trme871g00001 226 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 22 213 IPR043363 -
Trme871g00001 226 Pfam Myb-like DNA-binding domain 114 160 IPR001005 -
Trme871g00001 226 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Trme871g00001 226 Gene3D - 116 166 - -
Trme871g00001 226 FunFam Transcription factor SRM1 19 84 - -
Trme871g00001 226 CDD SANT 115 160 IPR001005 -
Trme871g00001 226 Gene3D - 20 84 - -
Trme871g00001 226 SUPERFAMILY Homeodomain-like 109 164 IPR009057 -
Trme871g00001 226 ProSiteProfiles Myb-like domain profile. 25 71 IPR001005 -
Trme871g00001 226 CDD SANT 25 67 IPR001005 -
Trme871g00001 226 SUPERFAMILY Homeodomain-like 20 73 IPR009057 -
Trme871g00001 226 MobiDBLite consensus disorder prediction 207 226 - -
Trme871g00001 226 SMART sant 21 73 IPR001005 -
Trme871g00001 226 SMART sant 112 162 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme871g00001 Trme-Chr871 1761 2623 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trme871g00001 Myb_DNA-binding 3.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme871g00001 - - tpra:123883408 357.451