Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme87102g00001 ATGTTGTGGCCATTCAAGGTCGTTGCCGGTGTAAATGACAAACCTATGATTACCCTTAAGTATAAGGGTCAAGAGAAGCAATTTTGTGCTGAGGAAATATCATCTATGGTCCTTACAAAGATGCGAGAAGTTGCTGAGGCATATCTGCAGTCTCCCGTCAAGAATGCTGTTGTTACTGTGCCGGCTTACTTCAATGATGCACAGCGAAAAGCCACTATAGATGCTGGTGCCATTGCTGGCATTAATGTCATTCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNAGTAAACGGAATATTTTTGTCTTTGACCTTGGCGGTGGTACTTTTGATGTATCTATTCTCACTATTAAGGGTGATGTCTTTGAAGTAAAAGCCATTGCTGGAAACACTCACCTAGGGGGAGAAGACTTTGATAATAGAATGGTGAACTACTTTGTAGAGGAGTTTAAAAAGAAGAATAAAGTGGATATTAGTGGTAACGCAAGAGCCTTAAGGAGGTTGAGAGCTGCTTGTGAAAGGGCAAAAAGGATACTCTCCTTTGCTTTTGTAACCACAGTTGAGGTAGAATCTTTATTTAATGGAATTGACTTCTTTTCATCAATAACTCGTGCCAAGTTTGAGGAAATTAATATGGACCTTTTCA 679 0.3608 MLWPFKVVAGVNDKPMITLKYKGQEKQFCAEEISSMVLTKMREVAEAYLQSPVKNAVVTVPAYFNDAQRKATIDAGAIAGINVIXXXXXXXXXXXXXXXXXXXXXXSKRNIFVFDLGGGTFDVSILTIKGDVFEVKAIAGNTHLGGEDFDNRMVNYFVEEFKKKNKVDISGNARALRRLRAACERAKRILSFAFVTTVEVESLFNGIDFFSSITRAKFEEINMDLF 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme87102g00001 226 ProSitePatterns Heat shock hsp70 proteins family signature 2. 113 126 IPR018181 -
Trme87102g00001 226 PRINTS 70kDa heat shock protein signature 119 129 - -
Trme87102g00001 226 PRINTS 70kDa heat shock protein signature 56 76 - -
Trme87102g00001 226 Coils Coil 84 84 - -
Trme87102g00001 226 FunFam Heat shock protein ssb1 1 36 - -
Trme87102g00001 226 Pfam Hsp70 protein 3 226 IPR013126 GO:0005524|GO:0140662
Trme87102g00001 226 SUPERFAMILY Actin-like ATPase domain 108 226 IPR043129 -
Trme87102g00001 226 PANTHER HEAT SHOCK PROTEIN 70KDA 2 226 IPR013126 GO:0005524|GO:0140662
Trme87102g00001 226 FunFam heat shock 70 kDa protein-like 8 91 - -
Trme87102g00001 226 FunFam Heat shock 70 kDa 145 226 - -
Trme87102g00001 226 Gene3D Actin; Chain A, domain 4 145 226 - -
Trme87102g00001 226 Gene3D - 1 94 - -
Trme87102g00001 226 SUPERFAMILY Actin-like ATPase domain 2 84 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme87102g00001 Trme-Chr87102 64 742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme87102g00001 3 226 Calmodulin-binding Proteins AT1G56410 68.304 1.62e-105 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme87102g00001 K03283 - gmx:102667578 327.405