Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86990g00001 GAGTTTGAGCTCCACAGAGATCTTCTAGAACTGATGACTTGCGGACATAGAAACATTCTGCAGTTCTGTGGTATTTGTGTGGATGATAATCATGGGTTATGTGTGGTGACTAAGTTCATGGTACGTGGGTCGGTCCATGACTTAATGCTAAAGAACAAGAAGCTTCAGAGTAAGGATGTTGTTAGAATCGCGGTTGATGTAGCTGAGGGGATCAAGTTTATGAATGACCATGGTGTTGCATATAGAGACCTTAATACACAGAGGATTCTATTAGATAGGCATGGTAATGCTTGCTTGGGAGATATGGGTGTAGTCACTGCCTGCAAGAGTGTTGGTGAAGCAACGGAGTATGAAACTGATGGTTATAGATGGCTAGCTCCTGAGGTTTGCTTCTATTCATTCACACTCTCTTCATGTTAA 420 0.4238 EFELHRDLLELMTCGHRNILQFCGICVDDNHGLCVVTKFMVRGSVHDLMLKNKKLQSKDVVRIAVDVAEGIKFMNDHGVAYRDLNTQRILLDRHGNACLGDMGVVTACKSVGEATEYETDGYRWLAPEVCFYSFTLSSC 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86990g00001 139 ProSiteProfiles Protein kinase domain profile. 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme86990g00001 139 Gene3D Transferase(Phosphotransferase) domain 1 1 137 - -
Trme86990g00001 139 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 11 130 - -
Trme86990g00001 139 Pfam Protein tyrosine and serine/threonine kinase 8 133 IPR001245 GO:0004672|GO:0006468
Trme86990g00001 139 SUPERFAMILY Protein kinase-like (PK-like) 4 132 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme86990g00001 Trme-Chr86990 1 420 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86990g00001 3 129 MAP Kinase Kinase Kinase AT2G17700 37.692 1.42e-24 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-7 Trme86990g00001 PK_Tyr_Ser-Thr 3.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme86990g00001 - - pvu:PHAVU_008G258400g 258.07