Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86835g00001 CTTCGTGATGCGAAAATTGATAAGAGTCAAGTTCATGAGGTTGTTCTTGTTGGTGGATCAACAAGGATACCAAAAGTTCAACAGCTTTTGCAGGATTTCTTCAATGGAAAAGAGCTTTGCAAGAGTATTAACCCTGATGAAGCTGTTGCTTATGGTGCTGCTGTTCAAGCCGCGATTTTAAGCGGTGAAGGTGATGAAAAGGTTCAAGATCTTTTGTTGCTTGATGTTACTCCTCTTAGTTTGGGATTAGAAACTGCAGGCGGTGTTATGACAACTTTGATTCCAAGGAACACAACGATTCCTACTAAGAAGGAACAAATTTTCTCAACTTATTCAGATAATCAACCTGGTGTTTTGATTCAAGTTTTTGAAGGTGAGCGTGCAAGAACAAAGGATAATAATCTTCTTGGGAAATTTGAGCTCACTGGTATACCTCCTGCTCCAAGAGGTGTACCACAGATCAATGTCTGTTTTGATATTGATGCAAATGGGATTTTGAATGTTTCTGCTGAAGATAAAACAGCTGGAGTGAAGAACAAGATAACTATAACAAATGATAAGGGAAGGTTAAGTAAGGAAGAGATAGAGAAGATGGTGAAAGATGCAGAGAGGTACAAGGCAGAGGATGAAGAGGTGAAGAGGAAAGTGGAAGCGAAGAATTCGCTCGAGAATTATGCTTATAATATGAGGAATACTATTAAGGATGAGAAGATTGGTGGAAAGTTGGGTTCTGATGATAAGGA 743 0.3903 LRDAKIDKSQVHEVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDEKVQDLLLLDVTPLSLGLETAGGVMTTLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIEKMVKDAERYKAEDEEVKRKVEAKNSLENYAYNMRNTIKDEKIGGKLGSDDK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86835g00001 247 Gene3D - 1 43 - -
Trme86835g00001 247 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 66 223 IPR029047 -
Trme86835g00001 247 FunFam heat shock 70 kDa protein-like 35 62 - -
Trme86835g00001 247 PANTHER HEAT SHOCK PROTEIN 70KDA 1 235 IPR013126 GO:0005524|GO:0140662
Trme86835g00001 247 PRINTS 70kDa heat shock protein signature 70 89 - -
Trme86835g00001 247 PRINTS 70kDa heat shock protein signature 43 63 - -
Trme86835g00001 247 PRINTS 70kDa heat shock protein signature 11 27 - -
Trme86835g00001 247 PRINTS 70kDa heat shock protein signature 151 167 - -
Trme86835g00001 247 Coils Coil 195 215 - -
Trme86835g00001 247 SUPERFAMILY Actin-like ATPase domain 1 62 IPR043129 -
Trme86835g00001 247 FunFam Heat shock 70 kDa 65 219 - -
Trme86835g00001 247 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 217 247 IPR029048 -
Trme86835g00001 247 ProSitePatterns Heat shock hsp70 proteins family signature 3. 14 28 IPR018181 -
Trme86835g00001 247 Gene3D - 44 57 - -
Trme86835g00001 247 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 58 242 IPR029047 -
Trme86835g00001 247 Pfam Hsp70 protein 1 242 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme86835g00001 Trme-Chr86835 1 743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86835g00001 1 247 Calmodulin-binding Proteins AT3G12580 91.093 1.87e-161 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme86835g00001 K03283 - gmx:100782173 464.536