Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86755g00001 ATGCATCATAATTGTTCACCTCCTGTTGTTCATCGTGATATATCCAGCAAGAATGTTATTTTGGATTTGGAATATGTGGCTCATATCTCAGACTTCGGAACATCTAAGTTTCTAAATCCCAATTCATCCAATTGGACTTCTTTTGCAGGCACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTAAATGAGAAATGTGATGTGTACAGTTTTGGAGTATTAACCTTAGAAATACTTTTTGGGAAGCATCCTGATCCTGGAGATGTTGTAACTTCTTTGTGGCAACAACCTTCACACAGTGTTATGGACCTGACACATGATACTATGTTGTTGATAGATAAGTTGGACCAACGTCTCCCCTATCCCTCAAACAATGTCCAAGAGGTGGAATTG 402 0.393 MHHNCSPPVVHRDISSKNVILDLEYVAHISDFGTSKFLNPNSSNWTSFAGTFGYAAPELAYTMEVNEKCDVYSFGVLTLEILFGKHPDPGDVVTSLWQQPSHSVMDLTHDTMLLIDKLDQRLPYPSNNVQEVEL 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86755g00001 134 Pfam Protein kinase domain 2 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme86755g00001 134 Gene3D Transferase(Phosphotransferase) domain 1 1 132 - -
Trme86755g00001 134 SUPERFAMILY Protein kinase-like (PK-like) 1 111 IPR011009 -
Trme86755g00001 134 ProSitePatterns Tyrosine protein kinases specific active-site signature. 9 21 IPR008266 GO:0004672|GO:0006468
Trme86755g00001 134 PANTHER LEUCINE RICH REPEAT KINASE 2 1 131 - -
Trme86755g00001 134 ProSiteProfiles Protein kinase domain profile. 1 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme86755g00001 Trme-Chr86755 8 608 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86755g00001 1 132 Receptor kinase-like Gene Family AT1G75820 41.429 1.74e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme86755g00001 Pkinase 3.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme86755g00001 - - gmx:100787487 196.823