Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86722g00001 GATTCCACTTCTTTTGAGTTGATTGATGAATCGAGCGAGCTGGTTTATGATGACCCAGAAGTCATTTACACCCGCTCACATTCTCTGGTTGGCCCTTCTAGTTGTATCAGTCAATCACTTAAACTCGGTAAGCTCACCATACATGAGTCTGACTCTGCCGATTCATTGGAACTAGTGGAGCCCGTCATTGAAGAGACCATTGAAGACATTAAAGAGACTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNGAAGATTTTGAGGTTTTGAAGGTTGTGGGGCAGGGAGCATTTGCAAAAGTGTATCAGGTGAGGAAAAAGGGCACTTCAGAAATATATGCTATGAAGGTTATGCGGAAGGATAAGATTATGGAGAAGAACCATGCTGAATACATGAAAGCTGAGAGGGAGATTTTGACAAAGATAGAGCACCCCTTTGTTGTACAACTTAGATACTCTTTTCAGGTACTTGTTTTCAMATTTGYAAAAAGGTTTTGTAGCATGCATCTTTCATCTTTTGTTGATTGTTCATGA 573 0.3525 DSTSFELIDESSELVYDDPEVIYTRSHSLVGPSSCISQSLKLGKLTIHESDSADSLELVEPVIEETIEDIKETXXXXXXXXXXXXXXXXXXXXXXXXEDFEVLKVVGQGAFAKVYQVRKKGTSEIYAMKVMRKDKIMEKNHAEYMKAEREILTKIEHPFVVQLRYSFQVLVFXFXKRFCSMHLSSFVDCS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86722g00001 190 ProSitePatterns Protein kinases ATP-binding region signature. 106 129 IPR017441 GO:0005524
Trme86722g00001 190 Coils Coil 98 99 - -
Trme86722g00001 190 Pfam Protein kinase domain 100 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme86722g00001 190 Coils Coil 63 73 - -
Trme86722g00001 190 ProSiteProfiles Protein kinase domain profile. 100 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme86722g00001 190 SUPERFAMILY Protein kinase-like (PK-like) 87 168 IPR011009 -
Trme86722g00001 190 Gene3D Phosphorylase Kinase; domain 1 53 170 - -
Trme86722g00001 190 PANTHER RIBOSOMAL PROTEIN S6 KINASE 79 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme86722g00001 Trme-Chr86722 2 574 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86722g00001 9 169 AGC Kinase Gene Family AT3G08720 60.248 1.45e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Trme86722g00001 Pkinase 2.2e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme86722g00001 K04688 - gmx:100804819 223.402