Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86628g00001 AAGTTTTCTTTGCGCGAACTCCAACTTGCAACTAAAAATTTCAGTGAAAGCAATGTAATTGGTCAAGGTGGTTTTGGAAAAGTGTATAGAGGACTACTCTCAGATAACACAAAAGTCGCTGTGAAACGCCTCACCGATTATCATAATCCTGGTGGCGAGGCTGCGTTTGAGAGAGAAGTTCATCTCATTAGTGTTGCGGTTCATAGAAACCTCCTAAGACTAATTGGGTTCTGCACAACCTCAACTGAAAGAATCCTTGTATATCCTTTCATGGAAAATCTAAGCGTAGCATATCGATTAAGAGATTTGAAATCTGATGACAAAGGCTTGGATTGGCCAACAAGGAAGCGTGTGGCTTTCGGTACAGCGCATGGTTTGGAATATCTACACGAGCAATGCAATCCGAAGATAATTCACCGTGATCTAAAGGCTGCGAATATCCTTTTAGATGACGAGTTTGAACCTGTTCTAGGTGATTTTGGACTAGCCAAGCTGGTCGATGTAAGGATGAGTCATGTTACCACTCAAGTCCGAGGTACAATGGGTCACATTGCCCCGGAATATTTGTCAACCGGAAAATCATCAGAGAAGACAGATGTTTTTGGATATGGCATAACACTTCTAGAACTTATCACAG 637 0.4192 KFSLRELQLATKNFSESNVIGQGGFGKVYRGLLSDNTKVAVKRLTDYHNPGGEAAFEREVHLISVAVHRNLLRLIGFCTTSTERILVYPFMENLSVAYRLRDLKSDDKGLDWPTRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEPVLGDFGLAKLVDVRMSHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELIT 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86628g00001 212 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 212 - -
Trme86628g00001 212 SMART serkin_6 14 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme86628g00001 212 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Trme86628g00001 212 SUPERFAMILY Protein kinase-like (PK-like) 2 212 IPR011009 -
Trme86628g00001 212 Pfam Protein kinase domain 15 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme86628g00001 212 FunFam Os07g0541700 protein 91 180 - -
Trme86628g00001 212 ProSiteProfiles Protein kinase domain profile. 14 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme86628g00001 212 FunFam Somatic embryogenesis receptor kinase 1 1 90 - -
Trme86628g00001 212 ProSitePatterns Protein kinases ATP-binding region signature. 20 42 IPR017441 GO:0005524
Trme86628g00001 212 Gene3D Transferase(Phosphotransferase) domain 1 91 212 - -
Trme86628g00001 212 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme86628g00001 Trme-Chr86628 20 743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86628g00001 1 212 Receptor kinase-like Gene Family AT5G10290 78.302 1.58e-122 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trme86628g00001 Pkinase 7.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme86628g00001 - - gmx:100800886 400.208