Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme865g00001 ATGAGTGAGCAGTTCGCAACTGATGTACAGGAGCACTACACATCTTATGGTATAATTCATGGTAGTTTTGAAGATATGTCCTTGGAAGAGAATCTTCTCAGAGGCATTTTAAGATCTTTTGAGAAACCAACAGCTATTCAGCAACGGGGAATAGTTCCATTTGGCAAGGGATTGGATGTCATACAACAGGCTCAGTCTGGAACAGGGAAGACAGCAACCCTCTGCTCTGGGATTCTGCAGCAACTTGACTTCAGTTTGACAGAATGCCAAGCCTTTGTCTTGACACCAACTCGTCTGCGTGCGAGGAAGATTGCCAAGGTTATAGATAAACTTGGAGAATATCTACATGTGAAGGTGTGTGCTTGTGTGAAAGGAGCCAAGGACCAGGACATTCTGTCAAATGGTGTTCATGTTGTTGTTGCTACCCCTGATCGTGTATTTAACTTGCTGGACAAATGGTGGCTTCAACCTGATTTCATCAGAATATTTGTACTGGATAAATTTGATGAACTGCTTTCAAGAAATTTTAAAGAGAAGATTTATGATATATTCCATATGTTGCCATCTAAGATTCAAGTGGGAGTTTTCTCTGCTACAATGCCTCCTCAGGCACTTGCGATTACAAGGAAGTTTATGACCAATCCTGAGATAATTCGTGTGAAGCGTGATGAGCTCACCTTGGAGGAGCGTGATGAGCTCACCGTCGAGGGTATAAAGCAATTTTATATCAATGTTGAAGAAGACATGAAGGTCGAGACACTCTATGATCTTTATGAGACATTGTTAATCACTCAGTGTGTCATTTTTGTGAACACCAGACAGAAGGTTCATGGGCTAACTGACGAGATGAGAAGACATGACTACATTGTCTCAGCAATACATGACGACATGAACCTGGATGCTAGATACAATAGTATGGTTGAATTCTGTTCTGGATCTTCCCGTGTTTTAATTACTAATGATCTTGTTCGTGGTTTTGATGTGCAGCAAGTGTCTTTAGTTATACATTTTGATATCCCAACACAGCATGAAAAGTATCTCCATCATATTGGTCGTAGTGGAATGTCTGATAGGAAAGGTGTTGCCATTTCCTTTGTCACAAATAAGGAACTAATGCTGCTTTTCAACATCCTGGATTTCGCCCAAGTGAAAATTAAGGAGCTGCCTGCCAATGCTGGCGAACTTCAACTTCTGCCGTGA 1200 0.4133 MSEQFATDVQEHYTSYGIIHGSFEDMSLEENLLRGILRSFEKPTAIQQRGIVPFGKGLDVIQQAQSGTGKTATLCSGILQQLDFSLTECQAFVLTPTRLRARKIAKVIDKLGEYLHVKVCACVKGAKDQDILSNGVHVVVATPDRVFNLLDKWWLQPDFIRIFVLDKFDELLSRNFKEKIYDIFHMLPSKIQVGVFSATMPPQALAITRKFMTNPEIIRVKRDELTLEERDELTVEGIKQFYINVEEDMKVETLYDLYETLLITQCVIFVNTRQKVHGLTDEMRRHDYIVSAIHDDMNLDARYNSMVEFCSGSSRVLITNDLVRGFDVQQVSLVIHFDIPTQHEKYLHHIGRSGMSDRKGVAISFVTNKELMLLFNILDFAQVKIKELPANAGELQLLP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme865g00001 399 Pfam DEAD/DEAH box helicase 44 203 IPR011545 GO:0003676|GO:0005524
Trme865g00001 399 Pfam Helicase conserved C-terminal domain 250 354 IPR001650 -
Trme865g00001 399 CDD SF2_C_DEAD 238 366 - -
Trme865g00001 399 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 21 48 IPR014014 GO:0003724
Trme865g00001 399 SMART helicmild6 277 354 IPR001650 -
Trme865g00001 399 SMART ultradead3 39 241 IPR014001 -
Trme865g00001 399 Gene3D - 231 395 IPR027417 -
Trme865g00001 399 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 237 396 IPR001650 -
Trme865g00001 399 PANTHER RNA HELICASE 20 373 - -
Trme865g00001 399 Gene3D - 7 225 IPR027417 -
Trme865g00001 399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 377 IPR027417 -
Trme865g00001 399 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 218 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme865g00001 Trme-Chr865 520 3243 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme865g00001 13 395 Eukaryotic Initiation Factors Gene Family AT1G72730 62.468 1.88e-162 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme865g00001 K03257 - zof:122033581 472.626