Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86584g00001 ATGGGCACTAACGATGTCAGGGTCGATGTCAAGCTGAACAAGGCTATCTGGAGTCAGGGAATTAGAAGTGTACCCAGGAGGGTCAGGGTACGCATTGCTCGCAAGAGGAATGACGACGAAGACGCCAAGGAAGAATTGTACTCCCTTGTCACCGTTGTTGAAATTCCAAAGGAAGAGCTAAAAGGTTTGGGCACCAAGGTCATAGACGATGAAGATTGA 219 0.484 MGTNDVRVDVKLNKAIWSQGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVVEIPKEELKGLGTKVIDDED 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86584g00001 72 Pfam Ribosomal protein L31e 1 44 IPR000054 GO:0003735|GO:0005840|GO:0006412
Trme86584g00001 72 SMART Ribosomal_L31e_2 1 45 IPR000054 GO:0003735|GO:0005840|GO:0006412
Trme86584g00001 72 FunFam Os08g0505300 protein 1 72 - -
Trme86584g00001 72 SUPERFAMILY Ribosomal protein L31e 1 44 IPR023621 -
Trme86584g00001 72 Gene3D - 1 72 IPR023621 -
Trme86584g00001 72 ProSitePatterns Ribosomal protein L31e signature. 6 20 IPR020052 GO:0003735|GO:0005840|GO:0006412
Trme86584g00001 72 PANTHER 60S RIBOSOMAL PROTEIN L31 1 71 IPR000054 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme86584g00001 Trme-Chr86584 142 360 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86584g00001 1 72 Cytoplasmic Ribosomal Protein Gene Family AT4G26230 77.778 4.16e-37 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme86584g00001 K02910 - gmx:100499742 127.872