Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86531g00001 TTGCTTGGAGAAGGTTCTTCTAATTCAGATGTTCCTATTGATGAGTTGATCGAGAAAGCTGATGGATTTGCTGGAGTGTTTCCCGAGCACAAATATGAAATCGTTAGAAGGCTTCAAGANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNGCGTTGAAGAGAGCTGATATCGGAATTGCTGTTGCTGATGCTACAGATGCTGCTAGAAGTGCTTCTGATATTGTCCTAACTGAACCTGGTTTGAGTGTAATTATCAGTGCTGTGCTCACCAGCAGGGCCATTTTCCAAAGAATGAAGAACTATACAATTTATGCTGTGTCCATCACCATTCGTATCGTG 357 0.3641 MLGEGSSNSDVPIDELIEKADGFAGVFPEHKYEIVRRLQXXXXXXXXXXXXXXXXXALKRADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIV 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86531g00001 119 PANTHER CALCIUM-TRANSPORTING ATPASE 13 119 - -
Trme86531g00001 119 SUPERFAMILY HAD-like 10 94 IPR036412 -
Trme86531g00001 119 Coils Coil 35 39 - -
Trme86531g00001 119 Coils Coil 57 61 - -
Trme86531g00001 119 PRINTS H+-transporting ATPase (proton pump) signature 79 104 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme86531g00001 119 PRINTS H+-transporting ATPase (proton pump) signature 48 64 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme86531g00001 119 PRINTS H+-transporting ATPase (proton pump) signature 20 36 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme86531g00001 119 PRINTS P-type cation-transporting ATPase superfamily signature 48 67 - -
Trme86531g00001 119 PRINTS P-type cation-transporting ATPase superfamily signature 71 83 - -
Trme86531g00001 119 FunFam Plasma membrane ATPase 3 96 - -
Trme86531g00001 119 Gene3D - 6 115 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme86531g00001 Trme-Chr86531 3 716 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86531g00001 1 119 Primary Pumps ATPases AT1G80660 75.207 5.69e-52 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme86531g00001 K01535 - vvi:100249749 149.443