Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86519g00001 ATGACTCTTACTCAAATCAGTGTTGAACCTGGAGTTAGCCCAGTGGATGAGTTTCTATTCAACACACCAAGAATGACTTTGCAAGCAATGAAAGATGCTACAACTGAATCCCTCAATGTCGTTTGTGCAACTGTCAAAAGGATCTTGAACCCAGATTGCTTCTGGTATACCGCTTGTGTTTGTAACAAATCTGTGATTCCAGATTCAAACATGTTTTATTGCGACAAATGCAATAAGCATGTGTTGAAGGTTTTCCCTAGGTATTGCATGAAGGTTAGGGTTATGGATCAGACAGATTCTGCCACATTTGTGATATTTGACAAAGATGCAAGCTCTTTGTTCCACATGAGCTGTGCTGATATGTTAGAGGCTACTCAAAGG 381 0.4016 MTLTQISVEPGVSPVDEFLFNTPRMTLQAMKDATTESLNVVCATVKRILNPDCFWYTACVCNKSVIPDSNMFYCDKCNKHVLKVFPRYCMKVRVMDQTDSATFVIFDKDASSLFHMSCADMLEATQR 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86519g00001 127 Gene3D - 19 127 IPR012340 -
Trme86519g00001 127 SUPERFAMILY Nucleic acid-binding proteins 26 125 IPR012340 -
Trme86519g00001 127 Pfam Replication factor-A C terminal domain 42 124 IPR013955 -
Trme86519g00001 127 CDD RPA1_DBD_C 41 123 IPR047192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme86519g00001 Trme-Chr86519 100 666 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86519g00001 41 121 Core DNA Replication Machinery Family AT5G45400 29.213 9.18e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme86519g00001 - - tpra:123896294 240.736