Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86469g00001 ATGCAGGCCTTCTCCTTGGATTTTAACCTGAGGTCTCACATGAAGACACATTCACAAGAGAACTATCATATTTGCCCGTACCCGGATTGTGGGAAGAGATACGCTCATGAATACAAGCTAAAGAATCACATTGCTTCTCATCATGAAAAG 150 0.42 MQAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEK 50
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86469g00001 50 Coils Coil 45 50 - -
Trme86469g00001 50 SMART c2h2final6 23 47 IPR013087 -
Trme86469g00001 50 SUPERFAMILY beta-beta-alpha zinc fingers 8 49 IPR036236 -
Trme86469g00001 50 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 50 IPR013087 -
Trme86469g00001 50 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 2 49 - -
Trme86469g00001 50 Gene3D Classic Zinc Finger 1 50 - -
Trme86469g00001 50 Pfam Zinc finger, C2H2 type 23 47 IPR013087 -
Trme86469g00001 50 ProSitePatterns Zinc finger C2H2 type domain signature. 25 48 IPR013087 -
Trme86469g00001 50 FunFam zinc finger transcription factor YY1 20 50 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86469g00001 1 50 C2H2 Transcription Factor Family AT4G06634 88.000 1.51e-26 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme86469g00001 zf-C2H2 0.00029 CL0361