Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86397g00001 ATGGAGTATGCTGCTGGAGGAGAACTCTTTGAGCGGATATGCAGTGCTGGTAGATTTAGTGAAGATGAGGCAAGGTTTTTCTTTCAGCAATTGATATCAGGAGTCAGTTACTGTCATTCAATGCAAATCTGCCATAGAGATTTGAAGCTTGAAAACACACTCTTAGATGGAAGCACTGCACCACGAGTCAAAATTTGTGACTTTGGTTACTCAAAG 216 0.412 MEYAAGGELFERICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSTAPRVKICDFGYSK 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86397g00001 72 Gene3D Transferase(Phosphotransferase) domain 1 1 72 - -
Trme86397g00001 72 ProSiteProfiles Protein kinase domain profile. 1 72 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme86397g00001 72 SUPERFAMILY Protein kinase-like (PK-like) 1 72 IPR011009 -
Trme86397g00001 72 ProSitePatterns Serine/Threonine protein kinases active-site signature. 43 55 IPR008271 GO:0004672|GO:0006468
Trme86397g00001 72 Pfam Protein kinase domain 1 72 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme86397g00001 72 PANTHER SERINE/THREONINE KINASE 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme86397g00001 Trme-Chr86397 23 522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86397g00001 1 71 CBL-interacting serine-threonine protein kinases AT1G30270 57.746 4.74e-23 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trme86397g00001 Pkinase 3.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme86397g00001 K14498 - qsu:112026336 152.14