Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86395g00001 AAAACATGGTATGGTATCCCTGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGGGAACATGTATATTCTACCGATATTTTGTCAAGTGACGGGGAGGATGGAGCCTTCGATGTTCTCTTGGGGAAAACAACTTTATTTCCACCTAATATTTTGTTGGAGCATAAAGTCCCTGTCTACAAGGCTGTCCAAAAGCCAGGGGAGTTTGTAATAACCTTCCCTAGAGCGTATCATGCAGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCACTTGGTGATTGGTTTCCTCTTGGGGCAATTGCGAGCAGGCGATATGCACTTCTTAACAGGATTCAGGCTTTCCCTCTTCAGACTTGCTTTCTCATAATAGAACAAAGATATCTTTCATTAATTTGTTGCGTTTCCAACATTGTGCCAGTTGGTTACTACTGA 444 0.4279 KTWYGIPGHAALEFERVVREHVYSTDILSSDGEDGAFDVLLGKTTLFPPNILLEHKVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFALGDWFPLGAIASRRYALLNRIQAFPLQTCFLIIEQRYLSLICCVSNIVPVGYY 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86395g00001 147 Gene3D Cupin 1 129 - -
Trme86395g00001 147 SUPERFAMILY Clavaminate synthase-like 1 122 - -
Trme86395g00001 147 Pfam JmjC domain, hydroxylase 1 93 IPR003347 -
Trme86395g00001 147 ProSiteProfiles JmjC domain profile. 1 110 IPR003347 -
Trme86395g00001 147 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 119 - -
Trme86395g00001 147 SMART cupin_9 1 110 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme86395g00001 Trme-Chr86395 2 626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86395g00001 1 135 C2H2 Transcription Factor Family AT5G04240 40.000 4.72e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme86395g00001 JmjC 1.1e-24 CL0029