Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86350g00001 ATGATTGAGTGGACTTCTTGGATACAGGTGTTGGTACTAGATGAGGCTGATCGTATTCTTGATAGTGGATTCAAGAGGGAACTAAATGCAATCATCTCACAATTACCAAAGCGTAGACAAACCATGCTGTTCTCGGCAACTCAAACAAAGTCGGTTCAAGATCTCGCAAGATTAAGTTTGAAGGACCCAGAGTATCTAAGTGTGCACGAAGAGTCTGTGACTGCCACTCCTACTCTTTTGAAGCAAATTGTGATGACTGTTCCCTTGGATCAAAAGTTAGATATGTTATGGAGTTTCATAAAGACGCATTTACAGTCAAAAACACTTGTCTTTCTATCTAGCTGTAAACAGGTAATTCCAATTCTCTGTCCTTTACCAAGGACATTTTTTACTTGA 396 0.3939 MIEWTSWIQVLVLDEADRILDSGFKRELNAIISQLPKRRQTMLFSATQTKSVQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMTVPLDQKLDMLWSFIKTHLQSKTLVFLSSCKQVIPILCPLPRTFFT 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86350g00001 131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 119 IPR027417 -
Trme86350g00001 131 Gene3D - 4 86 IPR027417 -
Trme86350g00001 131 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 12 20 IPR000629 -
Trme86350g00001 131 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 66 IPR014001 -
Trme86350g00001 131 Pfam DEAD/DEAH box helicase 8 55 IPR011545 GO:0003676|GO:0005524
Trme86350g00001 131 PANTHER RNA HELICASE 7 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme86350g00001 Trme-Chr86350 24 419 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86350g00001 8 118 Eukaryotic Initiation Factors Gene Family AT1G72730 28.571 2.24e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme86350g00001 K14776 - gmx:100792106 206.453