Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86305g00001 GATGATGATGAAGAGGAGGAGGATGAGGACGATGAAGACGAGGGGGAAAGAGAACTACCTGAAGTTGAAGCCGCTACTGAACCTGAGGGAATATTTAGCCAGATAATCAGAGAAACTTGGTTAGCTTTGGACGACGCTGATTTACCTCATGGAGCTAATTTTGGAGATTTCCTCGATACTAGACGCTTCGATGATCTGCTTGATCATCTTGCTGAAAATGACAGCTCAAGACGAGGAGCACCTCCTGCTGCTGCGTCGTTTGTGAATAGTCTTCCTTGTGTGGTCATTAGCAAGGAACACGAGAAGCACGATGAACTAGTTTGTGCCATCTGCAAGGATGTTTTGGCCCTTGGCACTAAAGTAAATCAACTTCCATGTTCTCACCTTTACCATTCTCATTGCATTTTGCCGTGGTTGAAGACACGTAATTCATGCCCTCTTTGTCGTTTTGAGCTTCCAACTGATGATAAGGATTACGAAGAGGGAAAACAGACCACTGATGGTAGAAATGTGATCTATGAGAGACATCAACTAAATGTTGGTGATGATAGTTTCTCTGATATTTCTGATGGAGCTGAAGCGGGTGAAGAAGATGGTATCACTACTCATGATACCGCAGATTCTTCTGCAATAAGAAGTGGTAGAGGAAGATGGTTGTTTCTTGCTGCAGCTCCAATCGTTAGTCTAGTAGGAATGGTTATTGTACTGTGGTTAGGTAGGAACTCTCAAATTGAAGGGACTAGAC 745 0.4362 DDDEEEEDEDDEDEGERELPEVEAATEPEGIFSQIIRETWLALDDADLPHGANFGDFLDTRRFDDLLDHLAENDSSRRGAPPAAASFVNSLPCVVISKEHEKHDELVCAICKDVLALGTKVNQLPCSHLYHSHCILPWLKTRNSCPLCRFELPTDDKDYEEGKQTTDGRNVIYERHQLNVGDDSFSDISDGAEAGEEDGITTHDTADSSAIRSGRGRWLFLAAAPIVSLVGMVIVLWLGRNSQIEGTR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86305g00001 248 Pfam Ring finger domain 108 149 IPR001841 -
Trme86305g00001 248 MobiDBLite consensus disorder prediction 1 20 - -
Trme86305g00001 248 SUPERFAMILY RING/U-box 88 155 - -
Trme86305g00001 248 ProSiteProfiles Zinc finger RING-type profile. 108 149 IPR001841 -
Trme86305g00001 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 153 - -
Trme86305g00001 248 FunFam E3 ubiquitin-protein ligase RING1-like 69 155 - -
Trme86305g00001 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 155 IPR013083 -
Trme86305g00001 248 CDD RING-H2_PA-TM-RING 107 149 - -
Trme86305g00001 248 SMART ring_2 108 148 IPR001841 -
Trme86305g00001 248 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme86305g00001 Trme-Chr86305 1 745 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86305g00001 35 238 C3H Transcription Factor Family AT5G01980 53.171 6.27e-67 213