Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86262g00001 ATGTGCAGTCATTTATTGGTCATTCTGCAATCTAAGGTTGATTTCCAGCATAGTCCTTTACCCTCTGATCCAAGAGCGGGAGGCAGGTCAATAAGGCATGATTCTGGTGAATTTGCAAAGCCTGTTTCTAGTAAAGGAATATGTCTTGACGATATACATCTAACATCAGAGGACTTGGAAATGTACATAGATCTTGCCCCATTTTTGAACCCCTCACCGTATATTGTACCGGAAGATATGTCTTTGACAAAGGTATACAATCTTTTCCGCCAACTTGGTTTGAGGCATTTATTTGTTGTTCCTCGTCCATCACGTGTTATTGGTTTAATAACCAGAAAAGATTTGTTAATTGAG 354 0.3927 MCSHLLVILQSKVDFQHSPLPSDPRAGGRSIRHDSGEFAKPVSSKGICLDDIHLTSEDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIE 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86262g00001 118 FunFam Chloride channel protein 27 118 - -
Trme86262g00001 118 ProSiteProfiles CBS domain profile. 69 118 IPR000644 -
Trme86262g00001 118 Pfam CBS domain 69 116 IPR000644 -
Trme86262g00001 118 SMART cbs_1 72 118 IPR000644 -
Trme86262g00001 118 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 3 116 - -
Trme86262g00001 118 SUPERFAMILY CBS-domain pair 50 116 IPR046342 -
Trme86262g00001 118 Gene3D - 47 118 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme86262g00001 Trme-Chr86262 11 716 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86262g00001 3 118 Ion Channels AT5G26240 87.931 3.31e-66 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme86262g00001 K05016 - gmx:100811908 229.18