Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86188g00001 CTAAGAGGATTCGACCTGATTGATGAAATAAAAAAAGTCATAGAAATTGCATGTCCAGCAACAGTCTCTTGTGCAGACATAATTGCACTAGCAACAAGAGACTCTGTTGCTTTAGCTGGTGGACCAAGCTATAATGTGTCTACAGGAAGACGCGACGGATTGATTTCAACAGTTAACGAAGTAAACCTTCCAGGACCAGAGTTCTCTATTTCAGATGCTTTACAAAGTTTCAATTCCAAAGGCATGACACTGGAAGAGATGGTTACTTTGCTAGGAGCTCACACCGTTGGATTCACGCACTGCAGCTTCATTGACAGTCGGATTAATAATGGAAGTTTTCCGATGGATCCTGATTTGAGAAAAAAATTATTTGAAGTTTGTGGCGTTAAAGGGAAAGATCCAACTGTGTTTTTGGATCAAAAAACACCAGTTGTGTTTGACAATGAATTTTATAATCAAATTCTTTTGAGGAGAGGAGTGCTATCAATTGATCAAAACCTGGCTGTGGATTCTATCTCGAAAGGAGTGGTAACAAGTTTGGCGGCTAACGGAGAGAGCTTTCAGAAGAAATTTGTTGATGCAGTAGTAAAGATGGGGGAAATTGAAGTGTTGACCGGAGGTGAAGGAGAAATTAGAAAAAATTGTAGAGTTTTTAACTCGTGA 663 0.3937 LRGFDLIDEIKKVIEIACPATVSCADIIALATRDSVALAGGPSYNVSTGRRDGLISTVNEVNLPGPEFSISDALQSFNSKGMTLEEMVTLLGAHTVGFTHCSFIDSRINNGSFPMDPDLRKKLFEVCGVKGKDPTVFLDQKTPVVFDNEFYNQILLRRGVLSIDQNLAVDSISKGVVTSLAANGESFQKKFVDAVVKMGEIEVLTGGEGEIRKNCRVFNS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86188g00001 220 Gene3D - 1 68 - -
Trme86188g00001 220 PRINTS Plant peroxidase signature 21 31 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme86188g00001 220 PRINTS Plant peroxidase signature 193 206 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme86188g00001 220 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme86188g00001 220 PRINTS Plant peroxidase signature 40 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme86188g00001 220 PRINTS Plant peroxidase signature 85 97 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme86188g00001 220 PRINTS Plant peroxidase signature 2 15 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme86188g00001 220 PRINTS Plant peroxidase signature 153 170 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme86188g00001 220 Gene3D Peroxidase, domain 2 69 198 - -
Trme86188g00001 220 PRINTS Haem peroxidase superfamily signature 22 39 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme86188g00001 220 PRINTS Haem peroxidase superfamily signature 40 52 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme86188g00001 220 PRINTS Haem peroxidase superfamily signature 139 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme86188g00001 220 PRINTS Haem peroxidase superfamily signature 86 101 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme86188g00001 220 Pfam Peroxidase 1 182 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme86188g00001 220 ProSitePatterns Peroxidases proximal heme-ligand signature. 86 96 IPR019793 -
Trme86188g00001 220 ProSiteProfiles Plant heme peroxidase family profile. 1 219 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme86188g00001 220 CDD secretory_peroxidase 1 218 IPR033905 GO:0004601|GO:0042744
Trme86188g00001 220 FunFam Peroxidase 64 198 - -
Trme86188g00001 220 SUPERFAMILY Heme-dependent peroxidases 2 219 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trme86188g00001 220 PANTHER - 2 219 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme86188g00001 Trme-Chr86188 1 663 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86188g00001 1 219 Peroxidase AT4G26010 52.727 1.00e-79 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme86188g00001 K00430 - dcr:108224440 280.026