Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86155g00001 ATGAATGACTTGATGACAAAATCGTTTCTAAGTTATGTAGAATTGAAGAAACAAGCACAGAAAGATTGTGAACAAGATCTTGACCTTGAACTAGGGAACCTCAACCCNNNNNNNNNNCCTAACCTTTCTCAATTCTTCCATGAAGTTGAAGCAATCAAGGTTGAAATGGAAGAGATTACCAATCTCTTGTTAGATCTTCAGCAACTGAATGAAGAGACAAAATCAACTCACAGTGCAAAAGTTCTGAGAGGGCTAAGAGACAGAATGGATTCTGATATGGTTGCCGTGCTACGCAAGGCGAATGTAATCAAGGCAAGGTTAGAGGCTCTTCAGAAATCCAACATTGCGAATCGAAGCATATCAGAATGCTACAAAGAAGGAAG 383 0.3864 MNDLMTKSFLSYVELKKQAQKDCEQDLDLELGNLNPXXXPNLSQFFHEVEAIKVEMEEITNLLLDLQQLNEETKSTHSAKVLRGLRDRMDSDMVAVLRKANVIKARLEALQKSNIANRSISECYKEG 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86155g00001 127 Coils Coil 49 76 - -
Trme86155g00001 127 Gene3D - 38 124 - -
Trme86155g00001 127 SUPERFAMILY t-snare proteins 41 116 IPR010989 GO:0016020|GO:0016192
Trme86155g00001 127 SMART SynN_4 37 125 IPR006011 GO:0016020
Trme86155g00001 127 Pfam Syntaxin 44 121 IPR006011 GO:0016020
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86155g00001 1 127 SNARE and Associated Proteins AT2G18260 62.121 4.93e-50 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme86155g00001 K08486 - qsu:111998859 173.326