Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86102g00001 ATGATGATCAATGAAGATCAAACAAGTCTTACAACAACAGCCAAGGAACAACCAGGTGAAGTGATGGACAGAGATAAGAACAGCGATGATGGAAGCGGAGATGACGGTCCCAAAGAGTGGTTAAACCTGAGCTTAGGAGGCACTTCAGTCTTAACAGCTGAAGAACCTGATTCACAATCAAGACCAGCCAAAGTTTTTTCCTGCAACTTTTGCATGAGAAAGTTCTTTAGTTCACAAGCATTAGGAGGTCATCAAAACGCTCACAAAAGGGAAAGAGGTGCAGCAAGAAGATATCAATCTCAGAGTCAGAGGACAATGGCACTAATGGGTTTGTCCATGAACAATATTCCAATGTTTCGATCACTTGNNNNNNNNNNANNNNNNNNNNANNNNNNNCCATGCAGAGGTGGAACTATGGTGGCAGTGGCACCGAGCTTTCAAGAAACATATGCGGCAGGGCTCGGAATGGCATGTACCCCTTTCACATCTGAGGATCATACTATTCCGGTGTGGCCAGGAAGCTTTCGTATGGTTCCAC 538 0.4275 MMINEDQTSLTTTAKEQPGEVMDRDKNSDDGSGDDGPKEWLNLSLGGTSVLTAEEPDSQSRPAKVFSCNFCMRKFFSSQALGGHQNAHKRERGAARRYQSQSQRTMALMGLSMNNIPMFRSLXXXXXXXXXXPCRGGTMVAVAPSFQETYAAGLGMACTPFTSEDHTIPVWPGSFRMVP 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86102g00001 179 SUPERFAMILY beta-beta-alpha zinc fingers 63 92 IPR036236 -
Trme86102g00001 179 Gene3D Classic Zinc Finger 48 114 - -
Trme86102g00001 179 MobiDBLite consensus disorder prediction 18 36 - -
Trme86102g00001 179 MobiDBLite consensus disorder prediction 1 43 - -
Trme86102g00001 179 MobiDBLite consensus disorder prediction 1 16 - -
Trme86102g00001 179 PANTHER ZINC FINGER PROTEIN 4-LIKE 2 178 - -
Trme86102g00001 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Trme86102g00001 179 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme86102g00001 Trme-Chr86102 209 746 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86102g00001 64 176 C2H2 Transcription Factor Family AT1G66140 33.571 4.13e-15 69.3