Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86033g00001 GTCAGTGTGTGTGGTTCTTCTGCATATGTCTCCCAATCAGCATGGATACAATCAGGAACTATAGAAGAAAATATTCTCTTTGGAAGCCCAAAGGACAAAGCAAAGTACAAGAATGTTATTCATGCTTGTTCACTGAAAAAGGATCTAGAACTTTTCTCACATGGAGATCAGACAATTATTGGTGATAGAGGTATAAACCTAAGCGGGGGTCAGAAACAGCGAGTACAGCTTGCCCGAGCACTCTACCAAGATGCTGATATTTATCTTCTTGATGATCCCTTCAGCGCTGTTGACGCGCACACTGGATCAGAGTTGTTTAGGGAGTATATATTGACGGCACTAGCAAACAAAACAGTCATTTTCGTGACCCATCAAGTTGAATTTCTTCCTGCTACTGATTTGATACTGGTA 411 0.4136 VSVCGSSAYVSQSAWIQSGTIEENILFGSPKDKAKYKNVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFREYILTALANKTVIFVTHQVEFLPATDLILV 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86033g00001 137 CDD ABCC_MRP_domain1 1 137 - -
Trme86033g00001 137 Gene3D - 1 137 IPR027417 -
Trme86033g00001 137 Pfam ABC transporter 6 94 IPR003439 GO:0005524
Trme86033g00001 137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 137 IPR027417 -
Trme86033g00001 137 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 4 137 - -
Trme86033g00001 137 FunFam Multidrug resistance associated protein, putative 31 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme86033g00001 Trme-Chr86033 1 490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86033g00001 8 137 Calmodulin-binding Proteins AT2G36910 36.090 2.45e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme86033g00001 - - gmx:100790550 262.692