Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86031g00001 GATGGAGTAGCCTCCTCCTCTTCAACAAGAGGCGGTGAAAAGTATGAGACAAGAGAGTCACTTAAAGAGAACATTATGAATGCTTTAGCACACCATACTTCGAGCAACATTGGGGTCATTGGGGTCTATGGGTTGGGTGGGGTGGGTAAGACCACTCTAGTGGAGGAAGTAGCTGAAATATCCAAGCAACACAAATTGTTTGATAAAGTTGTTATAGCCCATGTAAAAAAAAATCCAAAGATTCAAACAATTCAAGGGGAGATTGCAGATTTGTTGGGTCTACGATTCAATGAGGAGACTATTTTTGGAAGAGCACATCGTCTAAGGCAAAGAATCATGAAAGAAATAAATATCCTTATCGTTCTAGATGATATATGGACCATACTTGATTTGGAGAAAGTGGGAATTCCATTTGGTAATGAACATAATGGTTGCAAATTGTTGATGACATCTAGAAATCAAGATGTNNNNNNNCAAATGGATGTTCCAAAGGATTTCATTTTCAAACTTGAACTTATGAGTGAAAACGAGACATGGAGCTTGTTTCAATTTATGGCTGGGGATGTGGTTAAATATAGCAATTTGAAAGATGTAGCAATTCAAGTTGCCCAAAAATGTGCAGGTTTGCCTCTTGTGATAGTGGCAGTAGCTCAGACATTGAAAGGTAAGAGGGATGTTCATGCTTGGAAAGATGCATTAAGGAGATTACAAAGTGATCATCATACAATTTTTTCTGCTTTGGAAT 745 0.3772 DGVASSSSTRGGEKYETRESLKENIMNALAHHTSSNIGVIGVYGLGGVGKTTLVEEVAEISKQHKLFDKVVIAHVKKNPKIQTIQGEIADLLGLRFNEETIFGRAHRLRQRIMKEINILIVLDDIWTILDLEKVGIPFGNEHNGCKLLMTSRNQDVXXQMDVPKDFIFKLELMSENETWSLFQFMAGDVVKYSNLKDVAIQVAQKCAGLPLVIVAVAQTLKGKRDVHAWKDALRRLQSDHHTIFSALE 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86031g00001 248 Pfam NB-ARC domain 19 240 IPR002182 GO:0043531
Trme86031g00001 248 FunFam Probable disease resistance protein At1g61300 5 165 - -
Trme86031g00001 248 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 15 240 - -
Trme86031g00001 248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 239 IPR027417 -
Trme86031g00001 248 SMART AAA_5 36 248 IPR003593 GO:0016887
Trme86031g00001 248 Gene3D - 4 167 IPR027417 -
Trme86031g00001 248 PRINTS Disease resistance protein signature 112 126 - -
Trme86031g00001 248 PRINTS Disease resistance protein signature 206 220 - -
Trme86031g00001 248 PRINTS Disease resistance protein signature 39 54 - -
Trme86031g00001 248 Gene3D - 172 248 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme86031g00001 Trme-Chr86031 2 746 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86031g00001 36 244 WRKY Transcription Factor Family AT5G45050 25.926 2.60e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme86031g00001 - - tpra:123914460 351.673