Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme86004g00001 ATGGTGACCGGAACAAACGAAACTGCACCAAAAGAAACCACACGCGAATTCGTACAAGAAGAAAGTGAAGACCAAAGTTTCGAAGAGCTAGGGTTAGACGCACGTCTCGTCCGTGCTTTACTGAAGAAAGGAATTGAGAAACCAACTCCAATTCAACACGTAGCGATTCCATTGATTCTGGAAGGTAAAGACGTTGTTGCTCGTGCAAAAACAGGGTCTGGGAAAACACTTGCGTATCTTCTTCCATTGCTTCAGAAATTGTTTACTAGTAATGCTGATAGGAAGAAGTTAGCTCCTAATGTTTTTGTTCTTGTTCCTTCTCGTGAACTTTGTCAACAG 339 0.4218 MVTGTNETAPKETTREFVQEESEDQSFEELGLDARLVRALLKKGIEKPTPIQHVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFTSNADRKKLAPNVFVLVPSRELCQQ 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme86004g00001 113 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 12 113 - -
Trme86004g00001 113 MobiDBLite consensus disorder prediction 1 26 - -
Trme86004g00001 113 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 53 IPR014014 GO:0003724
Trme86004g00001 113 Pfam DEAD/DEAH box helicase 49 113 IPR011545 GO:0003676|GO:0005524
Trme86004g00001 113 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 113 IPR014001 -
Trme86004g00001 113 Gene3D - 3 113 IPR027417 -
Trme86004g00001 113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 113 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme86004g00001 Trme-Chr86004 214 552 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme86004g00001 17 113 Eukaryotic Initiation Factors Gene Family AT3G13920 35.052 3.40e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme86004g00001 K14810 - gmx:100800749 172.555