Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme85996g00001 ATAACAAAGTGGGAGTACTCACCAGAGGCGGAGTGGAAAACCTGGACATGGAGATCAATCAACGACGTGTACATGAACAGGGCATTTTTCAGACAAGGTGGAGCTGAGCTGACTAACAGACCATTCTCAAGTAAGGACAAGATCACAGCTAAACCTGGAACTTATGTCGGAAGGCTTACTCGTCATTCTGGATGCCTTAGATGCATAGTAGGGAAGCCTTGTTAG 225 0.4622 ITKWEYSPEAEWKTWTWRSINDVYMNRAFFRQGGAELTNRPFSSKDKITAKPGTYVGRLTRHSGCLRCIVGKPC 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme85996g00001 74 SUPERFAMILY Pectin lyase-like 2 64 IPR011050 -
Trme85996g00001 74 Gene3D - 1 67 IPR012334 -
Trme85996g00001 74 PRINTS Pollen allergen Amb family signature 15 39 IPR018082 -
Trme85996g00001 74 PRINTS Pollen allergen Amb family signature 45 68 IPR018082 -
Trme85996g00001 74 PANTHER PECTATE LYASE 18-RELATED 1 72 IPR045032 GO:0030570
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme85996g00001 1 74 Polysaccharide Lyase AT3G01270 45.946 2.32e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme85996g00001 K01728 - gmx:100796307 128.257