Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme85993g00001 ATTCTCAACAAGGAACCACATGTGTTGGTTGATGTTAGACCAGCTCACCATTTCAAGATTGTATCACTTCCAAATTCCTTGAACATTCCATTCTCAATTTTAGAGTCTAGGTTGCCGGAAATATCGTCAATTTTGAAGAAAGATGAAGAGGAAAAAGRCGCGGTTTCTGAATCAAGTGCACGATTATATGTAGTATGCAGAAGAGGAAATGATTCTCAAAGGGCTGTTCAATACCTTCACAAAATGGGATTTAATTCTGCTAAGGATATTGTTGGAGGTTTAGAGTCTTGGGCTCAAAATGTTGATCCTAACTTCCCTACTTATTAG 327 0.3761 ILNKEPHVLVDVRPAHHFKIVSLPNSLNIPFSILESRLPEISSILKKDEEEKXAVSESSARLYVVCRRGNDSQRAVQYLHKMGFNSAKDIVGGLESWAQNVDPNFPTY 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme85993g00001 108 PANTHER FAD-DEPENDENT OXIDOREDUCTASE 3 106 - -
Trme85993g00001 108 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 3 106 IPR036873 -
Trme85993g00001 108 ProSiteProfiles Rhodanese domain profile. 3 106 IPR001763 -
Trme85993g00001 108 Pfam Rhodanese-like domain 2 99 IPR001763 -
Trme85993g00001 108 FunFam Adenylyltransferase and sulfurtransferase MOCS3 1 108 - -
Trme85993g00001 108 SMART rhod_4 1 103 IPR001763 -
Trme85993g00001 108 Gene3D - 1 108 IPR036873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme85993g00001 Trme-Chr85993 2 328 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme85993g00001 4 108 Sulfurtransferasese or Rhodanese AT5G55130 65.094 2.04e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme85993g00001 K11996 - gmx:100801820 176.407