Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme85920g00001 ATGTATTTGAAAAAGCGTGAACGCGAGTTTAAGGTTACGATTCGGTTTGCTTCAAAGACGGACATCGTCCATCTTACTCAGTTTCTCCGTCGTTTGCAGCCGGATTGTCCTTATGAAACCATACAAGTTCTTGATGTTGCTTTGCGGGCGACTCCAGCTGAAATGTACACTGTTGCTGGGAGGTCATTTTTCTCACCCAATTTGGGGGCACCTGGGCCTCTTGGCGGTGGGATAGAATATTGGAGAGGCTTTTATCAAAGCCTTAGGCCAACACAAATGGGGCTCTCCCTCAACATTGATGTATCTTCGAGGGCCTTCTATGAACCGATTCTTGTGACTGAGTTTGTTTCTAAACATTTTAAATTGAATTTTTCAAGGCAGCTGTCTGATCAAGACCGTCTCAAG 405 0.4494 MYLKKREREFKVTIRFASKTDIVHLTQFLRRLQPDCPYETIQVLDVALRATPAEMYTVAGRSFFSPNLGAPGPLGGGIEYWRGFYQSLRPTQMGLSLNIDVSSRAFYEPILVTEFVSKHFKLNFSRQLSDQDRLK 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme85920g00001 135 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 4 122 - -
Trme85920g00001 135 SUPERFAMILY PAZ domain 25 122 IPR036085 GO:0005515
Trme85920g00001 135 SMART DUF1785_2 57 109 IPR014811 -
Trme85920g00001 135 Pfam Argonaute linker 1 domain 59 108 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme85920g00001 Trme-Chr85920 52 715 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme85920g00001 5 135 Eukaryotic Initiation Factors Gene Family AT5G43810 51.515 1.22e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme85920g00001 K11593 - psat:127108038 221.861