Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme85858g00001 GAGTATGGGGCAGATGTAGTTTATGAGGCTCAATTGATGAGTGATAGTGAAGCTCTTGACCTTCTACATAGAAAAGCCTTCAAAAGTGATAATTCAAGCAGCACTTTTTCAGAGCTAATTCCCCAGATACTGAAATATGCTCAATGTCTTCCATTAGCAATTAGAGTAATGGGTTCTTTCTTATGTACCCGAAATGCCACACAGTGGAGAGCTACCTTGGATGGNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNAAGTGCTTCATTTAAGTTTTGAGGGACTAGGGCCAAGAGAAAGAGAAATATTTCTGCATATTGCTTGTTTCTTTATAGGGGAAAAGGAGGATTATGTAAGGAGAATTCTAGATGCTTGTGGATTGCACCCTGATATTGGAATTCCACTTATTGCCGAAAAATCACTCATAACAATTAGAAACAAGGAAATTCATATGCATGGAATGTTGCAAGAGTTGGGGAAGCAAATTGTCCGGGGACAACACTCCAATGAGCCAGAATTCTGGAGCAGATTGTGGCTTTACCGGGATTTCCATCGTGTGATGATGACAGAAATGGTAACATATCTTTCAAAATAG 597 0.3735 EYGADVVYEAQLMSDSEALDLLHRKAFKSDNSSSTFSELIPQILKYAQCLPLAIRVMGSFLCTRNATQWRATLDGXXXXXXXXXXXXVLHLSFEGLGPREREIFLHIACFFIGEKEDYVRRILDACGLHPDIGIPLIAEKSLITIRNKEIHMHGMLQELGKQIVRGQHSNEPEFWSRLWLYRDFHRVMMTEMVTYLSK 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme85858g00001 198 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 187 IPR044974 GO:0006952
Trme85858g00001 198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 107 IPR027417 -
Trme85858g00001 198 SUPERFAMILY "Winged helix" DNA-binding domain 87 187 IPR036390 -
Trme85858g00001 198 Gene3D - 13 96 IPR042197 -
Trme85858g00001 198 Pfam NB-ARC domain 5 69 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme85858g00001 Trme-Chr85858 2 598 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme85858g00001 7 179 WRKY Transcription Factor Family AT5G45050 32.948 1.93e-26 103