Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8570g00001 ATGCAACAAAACATTGATCTTGAAGTAGAAGCTTATGCAGAATATGAATCTGATGTTACAAGCCAAGTTGCTTCTAATGTATCAACTCAAGAAACCTCTTCCAACATATCAAAACCAATAGGGATTAATCTTAATCATCCTAATTTAGATGATAATGATATATCTCTTGACTTAACTCTCAACTTCAAGAAAAATGAGTTAAGGGATTCAAATTCAATAGGATTCTCAATCTCAAGTACTTCTGAGAGCAGCAATGAACCTGCATCAGCAACAATTCAAAGAGTTTTCTCATGCAATTACTGTCAGAGAAAGTTTTTCAGCTCACAAGCTCTTGGTGGACACCAAAATGCACACAAAAGAGAAAGAACATTAGCAAAAAGAGCTATGAGAATGGGAATTTTTTCTGATAGGTATAATGCTAGTTTAGCATCTCTACCTTTACATGGTTCTTTTAGATCATTAGGGATAAAAGCACACTCTTCAATGCATTATGGTTTCTCAGTACCAACAACAATTCGGCCTCATAATCATCATGAGATGAAAAACAATACGAAATTCGAACAAGGGTGTGTTGGTTTTCCGATATTCTTGGAAGATGAGGAGTCAGAGTTGTTATGGCCTGGTAGTTTTCGACAGGCGTCCGAGGCAGGTGATGGACAACAGAATTTCATGCTCACTGAGATGAATCCATGTGTTGACAAAGAAAAATCTACACCTGATTTGACATTGAAACTTTGA 738 0.3631 MQQNIDLEVEAYAEYESDVTSQVASNVSTQETSSNISKPIGINLNHPNLDDNDISLDLTLNFKKNELRDSNSIGFSISSTSESSNEPASATIQRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGIFSDRYNASLASLPLHGSFRSLGIKAHSSMHYGFSVPTTIRPHNHHEMKNNTKFEQGCVGFPIFLEDEESELLWPGSFRQASEAGDGQQNFMLTEMNPCVDKEKSTPDLTLKL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8570g00001 245 SUPERFAMILY beta-beta-alpha zinc fingers 93 123 IPR036236 -
Trme8570g00001 245 Gene3D Classic Zinc Finger 75 141 - -
Trme8570g00001 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Trme8570g00001 245 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 26 173 IPR044246 GO:0009788
Trme8570g00001 245 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Trme8570g00001 245 FunFam Zinc finger protein 2 75 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8570g00001 Trme-Chr8570 68 805 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8570g00001 78 245 C2H2 Transcription Factor Family AT1G66140 47.761 1.97e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme8570g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8570g00001 - - vvo:131617518 390.963