Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8568g00001 ATGCCGTGGAGAGACTCTGACCACCATTGGTATGATGGGATGCCGAGGTGGGGAATTGAGGAAGCGTTGTTGGAGAGTTGGTTGATTTTTTCGGAGAGAGTTAGGAGAGAGATGAGAGAGGTTGCTCTTGTTGAGATGGAGAGAGTTGGGTTGCAGAATGGGTGTAATAACAGCGTGAAGAAGAAGAAGATGAAGATGGTGATGAAGGCAACCTCTTGTTCTTGGTCCGCCGTTTCAACTTTATCGTTCATCAACATCTCATTTTCTCGCCACCCAAACTGCGAGATTAAAAATCGATTCCTTTGTTGCGCTCGTGTCGTTCTAAGGATTACAATGGAAACCTATGATGAGTCTGTTGATGCTGATTCCATTCATTCATCTGAACGTGATTCATGGGACGATGAGTTGGACGATGATGGGAGTTATTCGGTATCTAGTGCGGATAAAAGTTCAACGGATGGCAACAATGATGTAGATGAAGTTGGAGGTGATAATAAGGTAAGGTTTGATACCATAACTGCTGAAGAAATTCGTTGTATGGAATTTGCTACTGTGAGTGAAGCTTATGACTTTTATTACCGTTATGGTAAATATAATGGTTTTGCTGTTAGGAAAAGTGATAGTAGGGTAACAGGGAGTGGAGATAATAAAGTAATAAAAATGAAACAGTTTGTATGCAACAGACACGGTGTAAGAGAGAAGAGACACTTAGTTAGGACAGATAGGAAATTAGAACATAGACGTTTGACTCGTACTCAGTGTGGAGCTAGGCTTCGTGTGAATTACAAAGCTGAAAAGGATAGATATGTTGTTACAGCTTTTGAAGAGACTCATAACCATGAATTAACCCCAGCTAG 857 0.4119 MPWRDSDHHWYDGMPRWGIEEALLESWLIFSERVRREMREVALVEMERVGLQNGCNNSVKKKKMKMVMKATSCSWSAVSTLSFINISFSRHPNCEIKNRFLCCARVVLRITMETYDESVDADSIHSSERDSWDDELDDDGSYSVSSADKSSTDGNNDVDEVGGDNKVRFDTITAEEIRCMEFATVSEAYDFYYRYGKYNGFAVRKSDSRVTGSGDNKVIKMKQFVCNRHGVREKRHLVRTDRKLEHRRLTRTQCGARLRVNYKAEKDRYVVTAFEETHNHELTPA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8568g00001 285 Pfam FAR1 DNA-binding domain 190 283 IPR004330 -
Trme8568g00001 285 MobiDBLite consensus disorder prediction 129 162 - -
Trme8568g00001 285 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 120 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8568g00001 Trme-Chr8568 21 1666 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trme8568g00001 FAR1 1.5e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8568g00001 - - tpra:123915240 205.682