Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme85689g00001 ATGTCAAAAGCTGTCTCCATACGAGTTATTTCAAACGGTCTCACAAGTGTTTATGTTAGTAGTGTTGATTTCTTAATGATGATATTGGAGTCTGATGACGAAATGCAGGCGACTTTGGAAGAAACGCACACTCGAACTGTTCGGTCTTGTGCTTGGTCACCATCCGGGAAATTGTTGGCAACTGCAAGTTTTGATGCCACCACTGCCATATGGGAAAATGTTGGGGGTGATTTTGAGTGTGTCTCTACTTTGGAGGGACATGAAAATGAAGTAAAGAGTGTATCTTGGAATGCAGCTGGAACTTTGCTTGCAACTTGTAGTAGGGACAAGTCTGTTTGGATATGGGAAGTGCAGCCAGGTAATGAGTTTGAGTGTGTGTCAGTGCTGCAAGGACATACTCAGGATGTGAAAATG 414 0.4324 MSKAVSIRVISNGLTSVYVSSVDFLMMILESDDEMQATLEETHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKSVSWNAAGTLLATCSRDKSVWIWEVQPGNEFECVSVLQGHTQDVKM 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme85689g00001 138 Pfam WD domain, G-beta repeat 42 71 IPR001680 GO:0005515
Trme85689g00001 138 Pfam WD domain, G-beta repeat 79 115 IPR001680 GO:0005515
Trme85689g00001 138 PANTHER WD40 PROTEIN CIAO1 26 138 IPR028608 GO:0016226|GO:0097361
Trme85689g00001 138 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 40 72 - -
Trme85689g00001 138 SUPERFAMILY WD40 repeat-like 11 136 IPR036322 GO:0005515
Trme85689g00001 138 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 84 118 - -
Trme85689g00001 138 ProSiteProfiles Trp-Asp (WD) repeats profile. 84 125 IPR001680 GO:0005515
Trme85689g00001 138 ProSitePatterns Trp-Asp (WD) repeats signature. 103 117 IPR019775 -
Trme85689g00001 138 SMART WD40_4 77 116 IPR001680 GO:0005515
Trme85689g00001 138 SMART WD40_4 32 72 IPR001680 GO:0005515
Trme85689g00001 138 ProSiteProfiles Trp-Asp (WD) repeats profile. 40 72 IPR001680 GO:0005515
Trme85689g00001 138 Gene3D - 6 138 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme85689g00001 Trme-Chr85689 83 727 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme85689g00001 55 137 U-box Gene Family AT2G33340 34.524 8.41e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme85689g00001 K24730 - jre:109002433 208.379