Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8563g00001 ATGAAGTTTGTTTCAAAATTAGATGCTGTGAACTTACCTGGTAATTCTGAGGATGAGGTTGACAGAAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCTGCTGTTTATCATTCAAGGTGTATCGGTGTGATGAAGATGTATATATCAGATGGGGAATGGCATTGTCCAGAATGCAAAATAAATACAATTGGGCCAACAATTGCACGGGGAACATCTCTTAGGGGGGCTGAAATGTTTGGAAATGATTTGTACGGGCAATCTTTCATCGGTACTTGCGACCACTTACTGGTGCTCAGTGGCAACACCGGGGAAGTTTGTCGTAAATACTACAATCAGAATGACATTCCTGAAGTTATCCGAGTGCTTTGTGCTTCCATTCAACATAGACCTGTATACTCTGGTATTTGCATGGCGATGTTACAATATTGGAATATTTCAGAAAGCTTCCAACACCTTTGTGTTCCAAATGGAACACATATAAACTCAGAAAATTCAAAGATAGATGAAAAAATATCTGCTGCATTACTTCCTCATGTGGTTGAAAATGACCATAAAGGTGTTAGTTTAGGGAAAGCAGAATATGGTCTAACATCTGTGAATGGGGTCTGTAGTGATAATATGGCCCCATCTCTTGATGCTTCACTGGTTACCAGTAGTCCCACTTGTGAAACCAATGGCAATGCTAACAAGTCATCTGCAGCTATTCCTGCCAACAGCACCTTGGTAAGCAATCAATTTAGTAATTGTGGGCAAACTAAAGGTGACTTAACTGGTTCTGGAAAGTCTAATGATTTTGTGTATAAGGGTTATTCCTATAAACCACAAGCATACATGAATAGTTATATGCATGGTGATTTTGCTGCATCTGCGGCTGCTAATTTGGCCGTTCTTTCTTCAGAGGATTCTAGACCAGAGGGTCACGTGTCTGACTTGAGGAAAGCTACATCTGAAAACACTAACCTGTTAGCAAAAGCATTTTCACTAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGACAAGAAGCTTGCAGAGGTTATAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCCTTGTTCCAAGCAAGAAAGGATGTATGTTAAATCATGCTGCTATATGTGCTACCAAAAGCGCCATGAAAATCCTTTCTGGTCTTGCTCCTGTAAGGAGTGGAGAAGGAATTAGCCCTACAATTGCAACCTATGTCATATATATGGAGGAAAGCTTATGTGGTTTAATAGATGGGCCCTTTCTTAGTGGAAACTATAGAAAGCAATGGCGTGAACAAGTGGAAAGGGCCACATCATTTAGGAACATAAAGCCCCTTTTACTTAAT 1368 0.4101 MKFVSKLDAVNLPGNSEDEVDRNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMYISDGEWHCPECKINTIGPTIARGTSLRGAEMFGNDLYGQSFIGTCDHLLVLSGNTGEVCRKYYNQNDIPEVIRVLCASIQHRPVYSGICMAMLQYWNISESFQHLCVPNGTHINSENSKIDEKISAALLPHVVENDHKGVSLGKAEYGLTSVNGVCSDNMAPSLDASLVTSSPTCETNGNANKSSAAIPANSTLVSNQFSNCGQTKGDLTGSGKSNDFVYKGYSYKPQAYMNSYMHGDFAASAAANLAVLSSEDSRPEGHVSDLRKATSENTNLLAKAFSLTASRFFWPSSDKKLAEVIRERCGWCLSCKALVPSKKGCMLNHAAICATKSAMKILSGLAPVRSGEGISPTIATYVIYMEESLCGLIDGPFLSGNYRKQWREQVERATSFRNIKPLLLN 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8563g00001 456 PANTHER PHD FINGER FAMILY PROTEIN 16 456 - -
Trme8563g00001 456 SMART PHD_3 26 69 IPR001965 -
Trme8563g00001 456 ProSitePatterns Zinc finger PHD-type signature. 27 68 IPR019786 -
Trme8563g00001 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 97 IPR013083 -
Trme8563g00001 456 SUPERFAMILY FYVE/PHD zinc finger 12 71 IPR011011 -
Trme8563g00001 456 ProSiteProfiles Zinc finger PHD-type profile. 24 71 IPR019787 -
Trme8563g00001 456 Pfam PHD-finger 27 69 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8563g00001 Trme-Chr8563 111 1709 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8563g00001 19 455 PHD Transcription Factor Family AT5G35210 46.171 2.99e-105 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme8563g00001 PHD 3e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8563g00001 - - tpra:123896519 873.618