Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme85623g00001 ATGGCTTCTAAGAATGAGTACAAAGCAAGTGAGCTTTTTGAAGCTCAAGCTAACTTGTACAATCAAATTTTCAGCTTCATGAGACCCATGTCCATAAAATGGGCCGTCGATCTCGGCATACCGGATATAATCCACAATCACGGCCAACCGATTACTCTTCCCGAGCTTGTCGTGGCTCTTCGAATTCCTGAATCGAAAGCCACTTGTGTTCATAGCATCATGCGTTTACTAGCACACAATAAAATCTTCACTATTGTGAACATAGATGATAACAAAGAAGCATATGCTCTTGCTCCAACATCAAAGCTTCTTGTCAAAGGCACTAATCATTGTTTATCATCAATGGTTCATTTGATAACTGATCCAACCATTGTTGATTTATATTATCAATTGAGTGAATGGACATCCAATGAGAAGCTCACAATCCATGAGACTACATTTTGGGATTACTATCATCAAAATCCCAATCATTTGAAGTCTTTCAATGATGCTATGGAAAGTGATTCTCATATGGTGAGATTGGCAATAAATGATTGCAAATTTGTTTTTGATGGTTTGACTTCTTTGGTTGATGTTGGAGGTGGAACCGGAAACACGGCTAAAATTATTTCTGAGAC 617 0.3809 MASKNEYKASELFEAQANLYNQIFSFMRPMSIKWAVDLGIPDIIHNHGQPITLPELVVALRIPESKATCVHSIMRLLAHNKIFTIVNIDDNKEAYALAPTSKLLVKGTNHCLSSMVHLITDPTIVDLYYQLSEWTSNEKLTIHETTFWDYYHQNPNHLKSFNDAMESDSHMVRLAINDCKFVFDGLTSLVDVGGGTGNTAKIISET 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme85623g00001 206 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 206 IPR016461 GO:0008168
Trme85623g00001 206 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Trme85623g00001 206 SUPERFAMILY "Winged helix" DNA-binding domain 10 108 IPR036390 -
Trme85623g00001 206 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 110 205 IPR029063 -
Trme85623g00001 206 Pfam O-methyltransferase domain 130 204 IPR001077 GO:0008171
Trme85623g00001 206 Gene3D - 1 104 IPR036388 -
Trme85623g00001 206 FunFam Coniferyl alcohol 9-O-methyltransferase 2 104 - -
Trme85623g00001 206 Gene3D Vaccinia Virus protein VP39 105 206 IPR029063 -
Trme85623g00001 206 PANTHER O-METHYLTRANSFERASE 11 204 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme85623g00001 Trme-Chr85623 132 748 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme85623g00001 29 203 Monolignol Biosynthesis Gene Families AT5G54160 28.108 1.68e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme85623g00001 K22588 K13262 gmx:100818947 214.542