Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme85608g00001 ATGGCGGAAGAGACATATCCTATGGAAATCGACATCGCCGATAAGGGCAAATCCGTCATTCCCGCCGGCAACCCTTCCTACGGCGGCAAGGCTTCTCTCTGGGTCGAAAAGTACCGTCCTCAATCCCTCGACGACGTCGCTGCTCACCGTGATATTGTCGACACCATTGATAGATTGACTACTGAGAATAGATTACCGCATCTTCTGTTGTATGGTCCTCCTGGAACGGGAAAAACTTCAACGATTCTCGCCGTGGCACGCAAATTATACGGCGCGCAATATCATAATATGATTTTGGAGCTTAATGCTTCTGATGATAGAGGAATTGATGTTGTTAGACAACAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGTTTAAGCATAGTGTTTAACTTTGTGTTGAATAAGGAGGAAATTAGTATAGTTCTCCACTTATCCTTGCCTTCTCTGTTCAGGTTTACTGAACTGTTAGGGTTCAGTAGTAATTAG 498 0.4398 MAEETYPMEIDIADKGKSVIPAGNPSYGGKASLWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGLSIVFNFVLNKEEISIVLHLSLPSLFRFTELLGFSSN 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme85608g00001 165 CDD AAA 52 123 - -
Trme85608g00001 165 Pfam Rad17 P-loop domain 31 102 - -
Trme85608g00001 165 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 127 IPR027417 -
Trme85608g00001 165 Gene3D - 28 145 IPR027417 -
Trme85608g00001 165 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 34 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme85608g00001 Trme-Chr85608 67 727 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme85608g00001 1 141 Core DNA Replication Machinery Family AT1G77470 69.799 3.22e-65 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme85608g00001 K10756 - gmx:100782652 221.861