Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme855g00001 AAACCACTGGGGCTACTATCCTTGTTAGACGAAGAGTCCACTTTTCCAAATGGTACGGATTTGACATTTGCTGATAAGCTTAAGCAGCATTTGAAGTCTAATTCATGCTTCAGAGGAGAGCGAGATAAAGCCTTTACTGTGCGTCATTATGCTGGAGAGGTCAGTTATGATACAACTGCATTCCTAGAGAAGAACAGGGACCTATTGCACGTGGATTCCATCCAACTTTTATCCTCAAGCAAATGTCACCTTCCTCAGATATTTGCATCCTATATGCTTACTCAATCTGAGAAGCCTATAGTTGGTCCCTTACACAAGTTAGGTGGGGCAGATTCCCAAAAGCTAAGTGTTGCCACAAAATTCAAGGCACAATTGTTTCAACTGATGCAACGTTTAGAGAGCACCACACCTCATTTTATTCGCTGCATTAAGCCCAATAACCTCCAATCACCTGGATCATACGAGCAAGGACTTGTACTGCAGCAGTTGAGATGTTGTGGGGTCCTAGAAGTGGTTCGAATATCAAGATCAGGCTTTCCAACTAGAATGTCTCACCAAAAGTTTGCGAAAAGATATGGTTTTCTTCTCCTTGAAAATGTTGCATCTCAGGATCCACTTAGTGTTTCTGTTGCTATTCTTCATCAGTTTAACATTTTGCCTGAGATGTATCAAGTTGGTTACACAAAATTATTCTTCCGAACTGGGCAGATTGGAGTACTTGAAGATACTAGGAATCGTACCCTCCATGGCATTTTACGTGTACAAAGTTGCTTCAGGGGTTATCAAGCTCGTTGCCTTCGCAAGGAGCTTTGGAGAGGAATCACTACTCTTCAGTCATTTATTAGAGGAGAAAAAACCAGAAAGGGGTTTGCAACTTCGCTTCAGAGACATAGAGCTGCTGTTATTATACAGAAGCACGTGAAAACAACATATGCAAGAAACAGAATGAAAATGACCACTGGTGCTGCAGTTGTCATACAATCATTTATTCGTGGATTGTTAGTCAGAAGATGCTCAGGAGATATAGGATTTTTAAAATCTGGAGGCATGAAGACTAACGAGGCAGATGAGGTTCTGGTGAAGGCGTCTTTCCTAGCTGAATTACAACGCAGGGTGCTTAAGGCTGAAGCTGGCCTGAGAGAGAAAGAAGAAGAAAATGACATCCTTCATCAACGTCTTCAACAGTACGAGAGCAGATGGTCTGAATATGAACTTAAAATGAAATCCATGGAAGAAGTATGGCAGAAACAAATGCGATCCCTACAGTCTAGCCTCTCCATCGCAAAGAAGAGTCTTGCTATGGATGATTCCGAAAGAAATTCAGATGCTTCTGTCAATGCAAGTGATGACAAGGAATACAGCTGGGATGTTGGAAATAATCAAAGGCGCCAAGAAAGCAGTGGAACACGATCAATGAGTGCTGGTTTGAGCGTTATAAGTCGGTTGGCTGAAGAGTTTGAGCAAAGGAGTCAAGTATTTGGTGATGATGCCAAGTTCTTGGTTGAGGTTGGAAAAAGGACTATGCTGCAAGACTGCGTGAAACAAAGGTTATTTTAA 1557 0.4194 KPLGLLSLLDEESTFPNGTDLTFADKLKQHLKSNSCFRGERDKAFTVRHYAGEVSYDTTAFLEKNRDLLHVDSIQLLSSSKCHLPQIFASYMLTQSEKPIVGPLHKLGGADSQKLSVATKFKAQLFQLMQRLESTTPHFIRCIKPNNLQSPGSYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFAKRYGFLLLENVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGYQARCLRKELWRGITTLQSFIRGEKTRKGFATSLQRHRAAVIIQKHVKTTYARNRMKMTTGAAVVIQSFIRGLLVRRCSGDIGFLKSGGMKTNEADEVLVKASFLAELQRRVLKAEAGLREKEEENDILHQRLQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAMDDSERNSDASVNASDDKEYSWDVGNNQRRQESSGTRSMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVGKRTMLQDCVKQRLF 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme855g00001 518 ProSiteProfiles IQ motif profile. 272 299 IPR000048 GO:0005515
Trme855g00001 518 Gene3D Kinesin motor domain 108 178 IPR036961 -
Trme855g00001 518 ProSiteProfiles Myosin motor domain profile. 1 245 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme855g00001 518 MobiDBLite consensus disorder prediction 432 471 - -
Trme855g00001 518 SMART iq_5 246 268 IPR000048 GO:0005515
Trme855g00001 518 SMART iq_5 318 340 IPR000048 GO:0005515
Trme855g00001 518 SMART iq_5 295 317 IPR000048 GO:0005515
Trme855g00001 518 SMART iq_5 269 291 IPR000048 GO:0005515
Trme855g00001 518 ProSiteProfiles IQ motif profile. 249 276 IPR000048 GO:0005515
Trme855g00001 518 Gene3D - 1 92 - -
Trme855g00001 518 ProSiteProfiles IQ motif profile. 319 348 IPR000048 GO:0005515
Trme855g00001 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 290 IPR027417 -
Trme855g00001 518 MobiDBLite consensus disorder prediction 432 446 - -
Trme855g00001 518 Pfam IQ calmodulin-binding motif 322 337 IPR000048 GO:0005515
Trme855g00001 518 Pfam IQ calmodulin-binding motif 273 290 IPR000048 GO:0005515
Trme855g00001 518 Pfam IQ calmodulin-binding motif 251 265 IPR000048 GO:0005515
Trme855g00001 518 Gene3D - 249 297 - -
Trme855g00001 518 Gene3D - 298 339 - -
Trme855g00001 518 Coils Coil 365 413 - -
Trme855g00001 518 Gene3D - 179 246 - -
Trme855g00001 518 SMART MYSc_2a 1 246 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme855g00001 518 Pfam Myosin head (motor domain) 1 233 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme855g00001 518 PANTHER MYOSIN 1 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme855g00001 Trme-Chr855 262 3583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme855g00001 1 503 Myosins gene family AT1G50360 77.535 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme855g00001 - K10357 gmx:100782618 904.434