Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8559g00001 ATGCATGACCTATTAAACCCTTTTCAGAAGATCCACAACCTCTGCGGCTTTGAGAGCTGCCTGTCTCACAGAAAAATTCCCAGTCCTCAATCTCACAAGTGGGGAATCCCCGGTCTTGAGTTTGAGGGCCGTGTAATAAATGTCAAATATGCTCGGCCTAAAAAGGAGAAAACACCGCCACCAGTGGGACGAAATCCGATAACATTTAAGTTGTTTGTTGCAAATTTGTCCTATGAAACAAGGGCTAAAGATCTCAGAGAGTTTTTTGATTCGGGAACTAGTAAAGTTGTTTCTGCAGATGTTGTATTTCGCGAGAATCCTAGAAGGCCAGCTGGTTATGGATTTGTGGCCTTCAAGTCCAAGAAAGAAGCTACTGAAGCTCTTTCCGAGTTTCAAGGAAAGACTTTAATGGGAAGGCCAATTAGGGTTGCANCTGGTAGGCGATTTGTTCAACCGGTAGAGGAGAGTGCAGGATCCGAAGATACATCTTCTGAGTCGAGCGTCAATGAGGAAGCAGAAGTTAACAAAGCTGATTGA 537 0.4413 MHDLLNPFQKIHNLCGFESCLSHRKIPSPQSHKWGIPGLEFEGRVINVKYARPKKEKTPPPVGRNPITFKLFVANLSYETRAKDLREFFDSGTSKVVSADVVFRENPRRPAGYGFVAFKSKKEATEALSEFQGKTLMGRPIRVAXGRRFVQPVEESAGSEDTSSESSVNEEAEVNKAD 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8559g00001 178 PANTHER OS02G0815200 PROTEIN 38 145 - -
Trme8559g00001 178 SMART rrm1_1 70 144 IPR000504 GO:0003723
Trme8559g00001 178 MobiDBLite consensus disorder prediction 156 170 - -
Trme8559g00001 178 Gene3D - 63 173 IPR012677 -
Trme8559g00001 178 SUPERFAMILY RNA-binding domain, RBD 60 148 IPR035979 GO:0003676
Trme8559g00001 178 MobiDBLite consensus disorder prediction 150 178 - -
Trme8559g00001 178 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 142 IPR000504 GO:0003723
Trme8559g00001 178 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 148 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8559g00001 71 148 Eukaryotic Initiation Factors Gene Family AT4G34110 37.975 2.56e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8559g00001 - - gmx:100806480 182.956