Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme85495g00001 ATGCATAATGGATGTAAACCACCTATTATGCATAGAGATTTGAAACCTTCTAACATATTGCTGGACGAAAACATGAATGCCAAGATTGCTGATTTTGGTCTAAGTAGAGGTTTTGGTAATGATATTGATTCTCATATATCTACATGCCCTGCCGGTACACGTGGTTACGTTGATCCTGA 179 0.3799 MHNGCKPPIMHRDLKPSNILLDENMNAKIADFGLSRGFGNDIDSHISTCPAGTRGYVDP 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme85495g00001 59 Pfam Protein kinase domain 9 59 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme85495g00001 59 ProSitePatterns Serine/Threonine protein kinases active-site signature. 9 21 IPR008271 GO:0004672|GO:0006468
Trme85495g00001 59 Gene3D Transferase(Phosphotransferase) domain 1 1 59 - -
Trme85495g00001 59 SUPERFAMILY Protein kinase-like (PK-like) 1 59 IPR011009 -
Trme85495g00001 59 ProSiteProfiles Protein kinase domain profile. 1 59 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme85495g00001 59 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme85495g00001 Trme-Chr85495 507 685 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme85495g00001 1 59 Receptor kinase-like Gene Family AT2G19230 66.102 4.80e-24 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trme85495g00001 Pkinase 4e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme85495g00001 - - mtr:25500765 114.005