Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme85400g00001 ACAATCTTTCTTCCAGTTGTTGGACTTGTCGACCCTGACAAGCTAAAACCTGGTGATCTTGTTGGTGTAAACAAAGATAGTTACTTAATCTTGGATACTCTTCCTTCCGAGTATGATTCTAGAGTTAAGGCTATGGAAGTTGATGAAAAGCCAACAGAGGACTACAATGACATTGGTGGATTAGAGAAGCAGATCCAAGAATTGGTTGAAGCCATTGTTTTGCCAATGACCCACAAAGAGCGCTTCCAGAAGTTAGGAATTCGTCCTCCCAAGGGAGTGCTCTTATATGGACCACCAGGGACTGGAAAAACTTTAATGGCCCGTGCCTGTGCTGCACAGACAAATGCCACTTTTCTGAAGTTGGCAGGTCCTCAGCTTGTCCAGGTATGA 390 0.4436 TIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQV 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme85400g00001 129 Gene3D - 45 129 IPR027417 -
Trme85400g00001 129 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 8 128 - -
Trme85400g00001 129 Gene3D - 1 44 IPR012340 -
Trme85400g00001 129 Pfam Proteasomal ATPase OB C-terminal domain 1 35 IPR032501 -
Trme85400g00001 129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 120 IPR027417 -
Trme85400g00001 129 Pfam ATPase family associated with various cellular activities (AAA) 93 127 IPR003959 GO:0005524|GO:0016887
Trme85400g00001 129 FunFam Cell division control protein 48 homolog C 45 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme85400g00001 Trme-Chr85400 110 612 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme85400g00001 34 127 Calmodulin-binding Proteins AT3G56690 35.714 1.55e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme85400g00001 K03065 - rcu:8280230 258.455