Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8538g00001 ATGTTCATGATTGTTGTATTACTTAATGTATCGTTACTGCAGACTTATGATCGACCATTCATCCAAAGGTGGCTGAATGAAATCCACAAAACTTGCCCTCAAACTCAGGATGTCCTCTCTCATTCCATCCTTKCTCCTAATTATTTGGTCCATGACATGATTTCAAGGTGGTGTAAGGAGCATGGAATTGAGCTACCAATGCCTATTGGGGACATCGACAATGGAGAAGTAAGCGAAGCGCACAAATACCGTTTACGTTCGTTACTTCACAAACTGTCATTATCTACACTGGACCAAAAAGAAGCTGCAAGAGAGCTTCGGCTGTTATCGAAGCGAATGCCTTCGTTTCGAACACTCTTTGGTGACTCAGAAGTGATTCAGAAATTACTCACTCCATTTTCACCTGGCATGGCTTGTATCGATCCCGAACTCCAAGAGGATTTGATCACAGCTGTTCTAAATCTCTCAATAGATGAAAAAAATAAAAGAGTTTTCGCAGAGGATGAAAAGCTTATTGCCTTTATTATCGATTCGTTGAAATCAGGAACCATTCAAACCAGAAGCAATGCTGCAGCCGCTATTTTGTCATTATCAGCACTTGATATCAACAAACACATCATTGGAAAAACCGGTGCTATCAAATATTTGGTTGATCTTTTAGAAAATGGACATCCATCAGCAATGAAAGATGCTGCTTCGGCTATATTCAATCTATGTATTGCACATGAAAATAAAGCGAGGACTGTTCGAGAAGGCGCAATTCAGGTTATTCTCAGCAAGATCATCATGGACCATGTTCTAGTCGACGAGCTTTTGGCCTTATTGGCACTTCTCTCTAGCCATTCCAAGGCTGTTGAGGCATTGGGAAGTCACGGCGCTGTCCCTTTCTTAATGGATATTTTAAGGGATGACAGTGTTTCGGATCGGAGCAAGGAGAACTGTGTTGCAATCTTGTACATAATATTTTTCAACGATAAAACAAAGAGGAAGGAAATTAGAGATGATGAAATAGCCAATGGTACATTGTCTAAGCTTGCACAATGTGGAACTTCACGAGCTAAGAGGAAAGCTTGCGGTATTCTCGATAGGCTCAAGATAGCTCAATCCTCAACACTTGAGGGTCTCTTTGCTGTCAATTTTAAATAA 1146 0.4066 MFMIVVLLNVSLLQTYDRPFIQRWLNEIHKTCPQTQDVLSHSILXPNYLVHDMISRWCKEHGIELPMPIGDIDNGEVSEAHKYRLRSLLHKLSLSTLDQKEAARELRLLSKRMPSFRTLFGDSEVIQKLLTPFSPGMACIDPELQEDLITAVLNLSIDEKNKRVFAEDEKLIAFIIDSLKSGTIQTRSNAAAAILSLSALDINKHIIGKTGAIKYLVDLLENGHPSAMKDAASAIFNLCIAHENKARTVREGAIQVILSKIIMDHVLVDELLALLALLSSHSKAVEALGSHGAVPFLMDILRDDSVSDRSKENCVAILYIIFFNDKTKRKEIRDDEIANGTLSKLAQCGTSRAKRKACGILDRLKIAQSSTLEGLFAVNFK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8538g00001 381 PANTHER U BOX DOMAIN-CONTAINING 11 363 - -
Trme8538g00001 381 SUPERFAMILY RING/U-box 14 65 - -
Trme8538g00001 381 SUPERFAMILY ARM repeat 95 364 IPR016024 -
Trme8538g00001 381 SMART arm_5 281 323 IPR000225 GO:0005515
Trme8538g00001 381 SMART arm_5 200 240 IPR000225 GO:0005515
Trme8538g00001 381 Gene3D - 85 374 IPR011989 -
Trme8538g00001 381 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 211 253 IPR000225 GO:0005515
Trme8538g00001 381 ProSiteProfiles U-box domain profile. 1 64 IPR003613 GO:0004842|GO:0016567
Trme8538g00001 381 SMART Ubox_2 6 57 IPR003613 GO:0004842|GO:0016567
Trme8538g00001 381 Pfam U-box domain 14 61 IPR003613 GO:0004842|GO:0016567
Trme8538g00001 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 64 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8538g00001 Trme-Chr8538 496 1641 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8538g00001 53 371 U-box Gene Family AT3G07360 51.077 1.07e-97 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8538g00001 - - gmx:100806132 446.047