Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8535g00001 GTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAGAGAGTGGGAGTGAAGTTTCTTTATGATTTGTACAAGAACAATCATGGGGGCATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAACAATAGCATTTCTTGCTGCCATATTTGGCAAAGAAGGAGACTCCGTTCTAACTGAGAAGCGAGTGGAGAAAAGAGACCCTGTATTAATAATTTGCCCATCATCCATTATTCAAAACTGGGAGAGTGAATTCTCTAAGTGGTCCAACTTCAGTGTTTCCATTTATCACGGTGCAAACCGCGATTTGATATCCACTGGAATATTGTGA 336 0.4137 VPASINCRLLEHQRVGVKFLYDLYKNNHGGILGDDMGLGKTIQTIAFLAAIFGKEGDSVLTEKRVEKRDPVLIICPSSIIQNWESEFSKWSNFSVSIYHGANRDLISTGIL 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8535g00001 111 PANTHER SNF2/RAD54 FAMILY MEMBER 1 106 - -
Trme8535g00001 111 Gene3D - 1 110 IPR038718 -
Trme8535g00001 111 Pfam SNF2-related domain 25 104 IPR000330 GO:0005524|GO:0140658
Trme8535g00001 111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 102 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme8535g00001 Trme-Chr8535 538 1755 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8535g00001 2 110 RAD5 or RAD16-like Gene Family AT3G16600 30.172 3.61e-12 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme8535g00001 SNF2_N 1.2e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8535g00001 K20098 - gmx:100781003 190.66