Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme85332g00001 ATGTATGTGAAAGTGAGTATGGCTGGTGCACCTTATTTAAGGAAAATAGATCTCAAATTTTACAAGAGTTACTCAGAACTTCTCAAGGTTTTGGAAAATATGTTCAAGTGTACATTTGGTGAATATTCAGAAAGAGAAGGTTATAATGGATCTGAATTTGTTCCAACTTATGAAGACAAAGATGGTGATTGGATGCTTATTGGAGATGTTCCTTGGGAGTAA 222 0.3423 MYVKVSMAGAPYLRKIDLKFYKSYSELLKVLENMFKCTFGEYSEREGYNGSEFVPTYEDKDGDWMLIGDVPWE 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme85332g00001 73 ProSiteProfiles PB1 domain profile. 1 73 IPR000270 GO:0005515
Trme85332g00001 73 SUPERFAMILY CAD & PB1 domains 1 73 - -
Trme85332g00001 73 Pfam AUX/IAA family 1 73 IPR033389 -
Trme85332g00001 73 Gene3D - 1 73 - -
Trme85332g00001 73 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 72 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme85332g00001 Trme-Chr85332 371 592 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme85332g00001 3 72 B3 DNA Binding Superfamily AT2G46530 40.000 9.38e-11 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trme85332g00001 AUX_IAA 9.1e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme85332g00001 K14484 - gmx:100780752 143.665