Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme85293g00001 ATGGTTAAGCATAATAATGTGATCCCTAATGAGCACTTTAGGAAGGATTGGCAAAACTATGTCAAGACTTGGTTCAATCAACCAGCTCGCAAGACAAGAAGACGGTTAGCTCGCCAGAAGAAGGCCGTTAAGATTTTCCCTAAGCCTACAGCTGGACCTCTTAGACCTGTTGTTCATGGTCAGACAGCGAAATACAACATGAAACTCAGAGCTGGGAAAGGGTTTTCTCTCGAAGAGTTGAAG 243 0.4403 MVKHNNVIPNEHFRKDWQNYVKTWFNQPARKTRRRLARQKKAVKIFPKPTAGPLRPVVHGQTAKYNMKLRAGKGFSLEELK 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme85293g00001 81 PANTHER 60S RIBOSOMAL PROTEIN L13 1 81 IPR001380 GO:0003735|GO:0005840|GO:0006412
Trme85293g00001 81 Pfam Ribosomal protein L13e 7 81 IPR001380 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme85293g00001 Trme-Chr85293 159 707 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme85293g00001 2 81 Cytoplasmic Ribosomal Protein Gene Family AT5G23900 87.500 9.54e-50 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme85293g00001 K02873 - twl:119995975 162.155