Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme85218g00001 TACGTTGCAAGGCCTCTAGATGAAATCAAACAAGCTACAGAAAAAGAAAGACGTCGTGCTTACGAGGCTGCAGAGGCACTCCAAATCAATTTGCAGTCTTCGAAGCCATCATTTATCAAGTCAATGGGTCTTCCTAGTAGATTTTGTGTGGAACACCTTCCAAAAACGGGGTTTAACATGACTTTAGAGGATGAAGATGGCTCAGAGTATGATGCTGTTTACATTGGTAGTAGAAGTGGGCTAAGTGGTGGCTGGAGAGCATTTGCATTGGAACATAAATTGGATGATGGTGATGCACTTGTTTTTGAATTGGTTGAACCAGCAAGGTTTAAGGTAATTTATGTTGTCAGTTCTCATCCAACTCTCTTTTAA 372 0.4086 YVARPLDEIKQATEKERRRAYEAAEALQINLQSSKPSFIKSMGLPSRFCVEHLPKTGFNMTLEDEDGSEYDAVYIGSRSGLSGGWRAFALEHKLDDGDALVFELVEPARFKVIYVVSSHPTLF 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme85218g00001 123 SMART B3_2 30 119 IPR003340 GO:0003677
Trme85218g00001 123 Gene3D - 11 118 IPR015300 -
Trme85218g00001 123 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 11 118 IPR044837 -
Trme85218g00001 123 Pfam B3 DNA binding domain 40 112 IPR003340 GO:0003677
Trme85218g00001 123 CDD B3_DNA 31 112 IPR003340 GO:0003677
Trme85218g00001 123 ProSiteProfiles B3 DNA-binding domain profile. 27 118 IPR003340 GO:0003677
Trme85218g00001 123 Coils Coil 10 30 - -
Trme85218g00001 123 SUPERFAMILY DNA-binding pseudobarrel domain 33 114 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme85218g00001 1 115 B3 DNA Binding Superfamily AT5G58280 54.762 2.76e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme85218g00001 B3 1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme85218g00001 - - tpra:123887244 202.601