Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme85214g00001 CTTCAGAGATGTGGAAAGAGCTGCAGGCTAAGGTGGACTAATTACCTTCGTCCTGATCTTAAGCATGGCCATTTCTCGGATGCAGAAGAGCAAACCATTGTGAAGCTTCATTCAGTTTTTGGTAACAGGTGGTCACTAATAGCAGCCCAGCTGCCAGGACGCACCGACAATGATGTCAAAAACCATTGGAACACCAAGCTGAAAAAGAAACTGTCAGGCATGGGTATAGACCCTGTTACCCACAAGCCATTCTCCCATCTAATGGCGGAAATTGCTACAACATTGGCACCCCCACAGGCAGCTCACCTAGCTGAAGCAGCCCTCGGTTGTTTCAAAGACGAGGTGCTCCACCTTCTTACCAGGAAGCCAATTAACTACCAGGGCCAACATTCTAATGCAGCAATGGGGAATAACATCACCGATTACTTTAACTGTAAGCCAGAAGAAAAGGAAGATACTGTTGAGAAGATTAAGTTTGACCTATCAAAGGCCATACAACAAGAACATGAAATGGTACCCACAAATAAACCTTGGGACTCCACTGCAGCTACATCTGCAAGTTTTGCAATGCCATACAAC 579 0.4577 LQRCGKSCRLRWTNYLRPDLKHGHFSDAEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTRKPINYQGQHSNAAMGNNITDYFNCKPEEKEDTVEKIKFDLSKAIQQEHEMVPTNKPWDSTAATSASFAMPYN 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme85214g00001 193 SUPERFAMILY Homeodomain-like 3 74 IPR009057 -
Trme85214g00001 193 FunFam transcription factor MYB80 24 84 - -
Trme85214g00001 193 Pfam Myb-like DNA-binding domain 23 65 IPR001005 -
Trme85214g00001 193 Gene3D - 23 83 - -
Trme85214g00001 193 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 71 IPR017930 -
Trme85214g00001 193 SMART sant 21 69 IPR001005 -
Trme85214g00001 193 CDD SANT 25 67 IPR001005 -
Trme85214g00001 193 ProSiteProfiles Myb-like domain profile. 17 67 IPR001005 -
Trme85214g00001 193 PANTHER F14D16.11-RELATED 1 175 - -
Trme85214g00001 193 Gene3D - 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme85214g00001 Trme-Chr85214 1 674 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme85214g00001 1 125 MYB Transcription Factor Family AT5G56110 87.200 4.35e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme85214g00001 Myb_DNA-binding 2.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme85214g00001 K09422 - gmx:100800764 347.051