Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme8520g00001 ATGCTAGTGGTTGAAAACCTCAACAAGTTTAAGAGTAACAGTGAAGATTGCCCTACATTGGTTTGCACGGACTTGGCTGCTAGGGGTCTGGACTTGGATGTAGATCATGTTATCATGTTTGACTTCCCTTTGAATTCTATTGATTACCTCCACCGCACAGGTAGAACTGCTCGTATGGGAGCAAAAGGTAAAGTAACAAGTTTGGTTACTAAAAAGGACTATAGCTTGGCAACCAAAATAGAGGAGGCGATAAGAAAGAATGAGAGTTTGGAGGCTATCACTAAAGAAAGTGTCCGAATGGACGTAACCAGGAACCAAATCACTGAGCAGAGAAGAAAGAACAAAAATGTGTTTAAAACTTCAAAAGTTAGGGACAAATCTGATTCTCGTGCAAGTCCTGTGAATACCAGGTCAGGTAATAGGGACAAATCTGATTCTCGCAGCCGTTCTGAGAATACCAGGTCAGGTATTAGGGACAAACCTGATTCTCACACCCGTTCTGAGAATACCAGGTCAGGTAGTAGGGACAAACCTGATTCTCGCACCCGTTCTGTGAATACCAGGTCAGGTAGTAGGGACAAATCTGATTCTCGCACCCGTTCTGAGAATACCAGGCCAGGTACGAAATCTGGTAAACAATCAGCATCATCAAAGTTTACGAAGACAGGATTTCCCGTTTCAAAACCTGTAAAATCTTCCAGTACAGGGGGCGGAATGCATCATCCTCAGATAAGAGACAAACATATGAGTGAAGTGGATTGGAGTCATGTTATACCACAGTAG 783 0.4317 MLVVENLNKFKSNSEDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVTKKDYSLATKIEEAIRKNESLEAITKESVRMDVTRNQITEQRRKNKNVFKTSKVRDKSDSRASPVNTRSGNRDKSDSRSRSENTRSGIRDKPDSHTRSENTRSGSRDKPDSRTRSVNTRSGSRDKSDSRTRSENTRPGTKSGKQSASSKFTKTGFPVSKPVKSSSTGGGMHHPQIRDKHMSEVDWSHVIPQ 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme8520g00001 260 Pfam Helicase conserved C-terminal domain 6 60 IPR001650 -
Trme8520g00001 260 MobiDBLite consensus disorder prediction 105 131 - -
Trme8520g00001 260 CDD SF2_C_DEAD 5 69 - -
Trme8520g00001 260 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 101 IPR001650 -
Trme8520g00001 260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 97 IPR027417 -
Trme8520g00001 260 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 4 97 - -
Trme8520g00001 260 Gene3D - 4 158 IPR027417 -
Trme8520g00001 260 MobiDBLite consensus disorder prediction 140 205 - -
Trme8520g00001 260 MobiDBLite consensus disorder prediction 206 239 - -
Trme8520g00001 260 SMART helicmild6 1 60 IPR001650 -
Trme8520g00001 260 MobiDBLite consensus disorder prediction 105 260 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme8520g00001 7 73 Eukaryotic Initiation Factors Gene Family AT3G13920 44.118 7.47e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme8520g00001 - - vvo:131623053 345.51